Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB3Z01_RS01005 Genome accession   NZ_OZ061254
Coordinates   210771..212534 (+) Length   587 a.a.
NCBI ID   WP_084998144.1    Uniprot ID   -
Organism   Lentilactobacillus parabuchneri isolate Lentilactobacillus parabuchneri CIRM-BIA2637     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 199821..214285 210771..212534 within 0


Gene organization within MGE regions


Location: 199821..214285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Z01_RS00965 - 200557..203340 (-) 2784 WP_085012880.1 DEAD/DEAH box helicase -
  AB3Z01_RS00970 - 203681..204268 (+) 588 WP_085012879.1 hypothetical protein -
  AB3Z01_RS00975 - 204626..205138 (+) 513 WP_085012878.1 helix-turn-helix domain-containing protein -
  AB3Z01_RS00980 - 205565..206653 (+) 1089 WP_085012877.1 ABC transporter ATP-binding protein -
  AB3Z01_RS00985 - 206646..207608 (+) 963 WP_085012876.1 carbohydrate ABC transporter permease -
  AB3Z01_RS00990 - 207608..208438 (+) 831 WP_057909630.1 carbohydrate ABC transporter permease -
  AB3Z01_RS00995 - 208435..209799 (+) 1365 WP_084998148.1 ABC transporter substrate-binding protein -
  AB3Z01_RS01000 - 209875..210570 (+) 696 WP_084998146.1 glycerophosphodiester phosphodiesterase family protein -
  AB3Z01_RS01005 rcrP 210771..212534 (+) 1764 WP_084998144.1 ABC transporter ATP-binding protein Regulator
  AB3Z01_RS01010 rcrQ 212534..214285 (+) 1752 WP_084998142.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64722.94 Da        Isoelectric Point: 9.7742

>NTDB_id=1165635 AB3Z01_RS01005 WP_084998144.1 210771..212534(+) (rcrP) [Lentilactobacillus parabuchneri isolate Lentilactobacillus parabuchneri CIRM-BIA2637]
MFKLLKRLNKREYAMIAISTIFIAIQVWLELKIPDYMTQITTALGTSGSTTTDILDPGLKMLALSILSMCSAIIVGYFAA
HVAAGFSARIRGKVFNQVMDYSTEDINQFSIPSLLTRSTNDITQIQTFIAMGMQVIIKAPITAVWAITKIANKGWQWTLA
TGIAVALLVIALTIILSLVQPKFKMVQKLTDKLNQTTRENLSGLRVVHAFNAEQFQNQKFDKANHELTGANLFANRVLAL
MNPVMTLISNGLTLAVYAIGAVLIENAAMGAGRLTLFSNMIVFSSYAMQVILAFLLLSIIFVILPRVTVSAGRINQVLSV
KPNIDYPDKTQQTPTSMGTVEFRDVSFKFKDAEASAIEHLSFKAEPGQTVAFIGSTGSGKSTVLNLLSHQYDITSGQILV
DGVDIRDYSESDLNNRLGYIPQKAVLFSGTIRSNINFGKTNQTSPMSDQQIIDALKTAQAWEFVSSNEKKLDAPVAQHGD
NFSGGQKQRLAIARAIARNPEVLMFDDSFSALDYATDRRLRDALKQNRRRTTKLIVAQRISTIMDADEIVVLDKGKVVGQ
GTHQQLLKNNDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=1165635 AB3Z01_RS01005 WP_084998144.1 210771..212534(+) (rcrP) [Lentilactobacillus parabuchneri isolate Lentilactobacillus parabuchneri CIRM-BIA2637]
ATGTTTAAACTACTAAAACGACTTAATAAGCGAGAATATGCCATGATCGCAATCAGTACGATATTCATCGCCATTCAAGT
ATGGCTTGAATTGAAAATTCCTGATTATATGACCCAAATTACCACTGCTTTGGGAACTTCAGGAAGTACGACAACGGATA
TTTTGGATCCTGGATTAAAAATGTTGGCTCTTTCTATTCTGAGTATGTGTTCGGCAATTATTGTCGGTTACTTTGCCGCA
CACGTTGCTGCTGGATTTAGTGCCAGAATTCGGGGCAAAGTCTTTAACCAAGTGATGGATTATTCAACTGAAGATATTAA
TCAGTTCTCAATTCCAAGCTTGTTGACCCGGTCAACAAATGATATTACTCAGATTCAAACATTCATTGCAATGGGGATGC
AAGTTATCATTAAAGCACCTATCACGGCAGTATGGGCCATCACGAAGATTGCAAATAAAGGATGGCAATGGACTTTAGCC
ACAGGAATCGCTGTAGCACTTTTAGTAATTGCGTTGACGATTATCCTATCTTTGGTACAGCCAAAATTTAAGATGGTTCA
GAAGTTAACCGATAAATTAAATCAAACAACTCGTGAAAACTTAAGTGGACTGCGGGTTGTGCATGCTTTCAATGCTGAAC
AATTCCAAAATCAAAAATTTGATAAAGCTAATCATGAACTGACCGGAGCTAACTTATTTGCCAACCGGGTTCTCGCTTTG
ATGAACCCAGTAATGACGTTAATCTCTAATGGTCTTACCTTGGCAGTCTACGCAATTGGTGCGGTATTAATTGAAAATGC
AGCAATGGGTGCTGGACGGCTAACACTGTTTAGCAATATGATTGTTTTCTCATCGTATGCGATGCAGGTTATTTTAGCGT
TCCTGCTGCTATCAATTATTTTTGTCATTCTGCCCCGGGTGACAGTTTCAGCCGGCCGAATCAATCAGGTTTTGAGTGTT
AAACCCAACATTGATTATCCGGACAAAACTCAGCAGACGCCCACATCCATGGGAACAGTTGAATTTAGGGATGTTTCCTT
TAAATTTAAGGATGCCGAAGCAAGTGCCATTGAACATTTATCATTCAAGGCTGAACCAGGACAAACAGTCGCTTTCATCG
GATCGACCGGTAGTGGGAAAAGTACCGTTTTGAACTTGCTGTCACATCAATATGACATTACCAGCGGACAAATATTAGTC
GATGGCGTGGACATTCGTGACTACTCTGAATCGGATTTGAATAATCGTTTAGGCTATATTCCACAGAAAGCTGTTCTATT
TAGTGGAACGATTCGTTCAAATATTAATTTTGGTAAAACCAATCAAACAAGTCCAATGAGCGATCAACAGATTATCGATG
CTCTTAAGACAGCTCAAGCATGGGAATTTGTTAGTTCAAACGAAAAGAAGCTGGATGCACCGGTTGCCCAGCACGGGGAT
AACTTCTCTGGCGGCCAAAAGCAACGATTGGCGATTGCACGGGCAATTGCGCGGAACCCTGAAGTATTGATGTTTGATGA
TTCCTTTTCGGCTTTGGATTATGCAACTGACCGGAGACTTCGGGATGCCTTGAAACAAAATCGCCGTCGCACAACAAAAC
TCATTGTGGCACAGCGGATTAGTACAATTATGGATGCAGATGAGATTGTGGTACTAGATAAAGGTAAAGTTGTGGGCCAA
GGAACCCATCAACAATTATTGAAAAATAATGACGTGTATCAAGAAATCGCATACTCACAGCTGTCAAAGGAGGAATTGGC
GTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-508)

ABC transporter transmembrane region (ABC_membrane)

(17-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.951

100

0.579

Multiple sequence alignment