Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3219_RS07595 Genome accession   NZ_OZ061250
Coordinates   1526231..1528033 (+) Length   600 a.a.
NCBI ID   WP_263773370.1    Uniprot ID   -
Organism   Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1521231..1533033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3219_RS07570 - 1522008..1522517 (-) 510 WP_216754481.1 monooxygenase -
  AB3219_RS07575 - 1522669..1523409 (+) 741 WP_216754482.1 MBL fold metallo-hydrolase -
  AB3219_RS07580 spxA 1523741..1524139 (+) 399 WP_057784613.1 transcriptional regulator SpxA -
  AB3219_RS07585 - 1524263..1524976 (+) 714 WP_057806944.1 adaptor protein MecA -
  AB3219_RS07590 - 1525079..1526188 (+) 1110 WP_216754483.1 competence protein CoiA -
  AB3219_RS07595 pepF 1526231..1528033 (+) 1803 WP_263773370.1 oligoendopeptidase F Regulator
  AB3219_RS07600 - 1528111..1528725 (-) 615 WP_216754485.1 DsbA family protein -
  AB3219_RS07605 - 1528994..1529644 (+) 651 WP_057784618.1 GTP pyrophosphokinase family protein -
  AB3219_RS07610 - 1529651..1530457 (+) 807 WP_216754486.1 NAD kinase -
  AB3219_RS07615 - 1530447..1531346 (+) 900 WP_216754487.1 RluA family pseudouridine synthase -
  AB3219_RS07620 mgtE 1531372..1532724 (+) 1353 WP_216754488.1 magnesium transporter -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68740.40 Da        Isoelectric Point: 5.1203

>NTDB_id=1165622 AB3219_RS07595 WP_263773370.1 1526231..1528033(+) (pepF) [Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669]
MTEIKQLPKRDEVPVKLTWDLTSIFENKEAVDSAIAKLNPEIKTLLAQQGTLKDSSENLLKVIQAELKIQNQLEHLYVYA
ELKNDQDTGNNVNQGLKDQITGLVSKISAQLAWIEPEILAIPNEKLTEFQNSDPKLKPYDHFLAVLKLKKDHILSAKEEA
ILAGASSIFDSSEKVFGILDNSDLKFPFVKNDTGQTVQLSQGMYSTLLQSTDQTVRKQAFVQLYAVYEQFRNTFAATLAG
EVKVHNFNAQIRGFKDVRQAAMSENAIPESVYSNLVTEVNSHLDLLHRYVELRKKILNLKEMHMYDLYTPITGKSPLSYP
YQEAQKEAKQALQIMGNDYVNHVDEAFNNRWIDVVENQGKRSGAYSSGVYGTNPFMLLNWQDDLDNLFTLVHEMGHSMHT
YYTTHNQPYQYGDYAIFVAEIASTTNENILTSYLLNKYDDPQIRLYVLNHYLDDFKGTVYRQTQFAEFEQFIHAADAKGE
PLTAEMMSSYYGDLNHRYYGNAVINDSQIKFEWTRIPHFYYNFYVYQYATGFAAASSLANGITQKKPNALENYLNYLKSG
SSDFPLNVMKKAGVDMTKTDYLEDAFQVFEERLNEFENLV

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1165622 AB3219_RS07595 WP_263773370.1 1526231..1528033(+) (pepF) [Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669]
ATGACTGAGATAAAACAATTACCTAAACGAGATGAAGTACCAGTTAAATTGACCTGGGATCTAACTAGTATTTTTGAAAA
TAAAGAAGCGGTTGATTCTGCGATTGCAAAATTGAATCCAGAAATAAAAACGTTACTTGCCCAACAAGGAACACTGAAAG
ATAGTTCTGAAAACCTGTTAAAGGTGATTCAGGCTGAACTAAAGATTCAGAATCAGTTAGAACATCTTTATGTGTATGCT
GAACTAAAAAACGATCAAGATACTGGAAACAATGTGAATCAAGGGCTAAAAGATCAAATTACTGGTTTAGTCTCTAAAAT
TTCTGCACAATTGGCTTGGATAGAACCAGAAATTTTGGCTATCCCAAATGAAAAATTGACAGAGTTTCAAAACAGTGACC
CTAAACTTAAACCTTATGACCATTTTTTGGCTGTTTTAAAGTTAAAAAAAGATCATATTTTATCTGCGAAGGAAGAAGCA
ATATTAGCAGGTGCTAGCTCTATTTTTGATTCTTCAGAAAAAGTATTTGGTATTTTAGATAATTCGGATCTAAAATTTCC
GTTTGTAAAGAACGATACAGGGCAAACTGTCCAGCTTTCTCAAGGAATGTATTCAACCCTGTTACAATCGACAGATCAGA
CTGTACGTAAACAAGCATTTGTGCAATTGTATGCCGTTTATGAACAATTTAGAAACACGTTTGCTGCCACGCTAGCCGGT
GAAGTAAAAGTGCATAATTTTAACGCTCAAATTCGCGGTTTTAAAGATGTACGGCAAGCGGCAATGAGTGAAAATGCAAT
CCCTGAATCAGTTTATTCAAATCTTGTTACGGAAGTGAATTCTCATTTAGATTTACTTCATCGCTATGTTGAGTTAAGAA
AGAAAATTCTTAATTTGAAAGAGATGCATATGTATGATCTATATACACCTATTACAGGAAAATCACCATTAAGTTATCCT
TATCAGGAAGCTCAAAAAGAAGCCAAACAGGCACTTCAAATTATGGGTAATGATTATGTTAATCATGTAGATGAGGCATT
CAATAATCGGTGGATTGATGTCGTTGAAAATCAAGGTAAACGTAGTGGTGCTTATTCGTCAGGAGTGTACGGAACAAATC
CATTTATGCTATTAAATTGGCAAGACGATTTGGATAATCTGTTTACGCTGGTGCATGAAATGGGTCACAGTATGCATACT
TATTACACCACACATAATCAGCCCTACCAATATGGTGATTACGCCATTTTTGTAGCTGAAATTGCATCAACAACTAATGA
AAATATTTTGACCTCATATTTACTGAATAAATATGATGACCCACAAATTAGATTGTATGTTTTAAACCATTATTTAGATG
ATTTTAAAGGAACTGTATATCGTCAAACACAATTTGCCGAATTTGAACAATTTATTCATGCGGCGGATGCTAAAGGGGAG
CCTTTGACGGCGGAAATGATGTCGTCTTATTATGGTGACTTAAATCATCGTTACTATGGAAATGCAGTTATTAATGATTC
ACAGATCAAGTTTGAATGGACACGAATTCCTCATTTTTACTATAACTTTTATGTTTATCAATATGCAACTGGTTTTGCTG
CCGCATCGTCATTAGCAAATGGTATTACACAAAAGAAACCTAATGCACTTGAAAACTATCTTAATTACTTGAAATCTGGT
AGTTCTGATTTTCCATTAAATGTGATGAAAAAAGCAGGGGTTGATATGACTAAAACAGACTATTTGGAAGATGCTTTTCA
AGTATTTGAAGAACGGTTAAATGAATTTGAAAATTTAGTCTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.777

98.5

0.51

Multiple sequence alignment