Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3219_RS06050 Genome accession   NZ_OZ061250
Coordinates   1236130..1237500 (+) Length   456 a.a.
NCBI ID   WP_216753519.1    Uniprot ID   -
Organism   Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1231130..1242500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3219_RS06025 - 1231951..1232638 (+) 688 Protein_1186 filamentation induced by cAMP protein fic -
  AB3219_RS06030 - 1232880..1234259 (-) 1380 WP_216753522.1 aminopeptidase C -
  AB3219_RS06035 rpiA 1234312..1234998 (-) 687 WP_216753521.1 ribose-5-phosphate isomerase RpiA -
  AB3219_RS06040 - 1234985..1235311 (-) 327 WP_057805732.1 GNAT family N-acetyltransferase -
  AB3219_RS06045 - 1235511..1236047 (+) 537 WP_216753520.1 dUTP diphosphatase -
  AB3219_RS06050 radA 1236130..1237500 (+) 1371 WP_216753519.1 DNA repair protein RadA Machinery gene
  AB3219_RS06055 - 1237532..1238650 (+) 1119 WP_216753518.1 PIN/TRAM domain-containing protein -
  AB3219_RS06060 gltX 1238734..1240221 (+) 1488 WP_216753517.1 glutamate--tRNA ligase -
  AB3219_RS06065 cysS 1240345..1241751 (+) 1407 WP_216753516.1 cysteine--tRNA ligase -
  AB3219_RS06070 - 1241755..1242174 (+) 420 WP_260365652.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50047.56 Da        Isoelectric Point: 8.1460

>NTDB_id=1165615 AB3219_RS06050 WP_216753519.1 1236130..1237500(+) (radA) [Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669]
MAKAKTQFVCQNCGYVSPRFLGRCPSCGQWNTLVEERVESEKVNHKARISFEGQHAKPQLISQVDMTETPRVKTGLEEFN
RVLGGGIVSGSLVLIGGDPGIGKSTLLLQISGQLSEKKHRVLYVSGEESAAQIKMRADRLNVASENFYLFPETDMNSIQA
AIKELKPTYVVIDSIQTMQEPDIQSTVGSVAQVREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMRETGLTEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALITPTTFG
NAKRTASGLDHNRVSLIMAVLEKRANFLLQNQDAYLKAAGGVKLDEPAIDLAIAISIASSYRNKGTDPMDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFKRIYVPKNNLQGWTPPTGIQVVGVATLSEALHKIFK

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1165615 AB3219_RS06050 WP_216753519.1 1236130..1237500(+) (radA) [Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669]
ATGGCAAAAGCAAAAACACAGTTTGTCTGTCAAAATTGCGGGTACGTTTCACCCCGTTTTTTGGGCCGTTGTCCAAGCTG
TGGTCAATGGAACACATTAGTTGAAGAACGTGTTGAAAGTGAAAAAGTGAATCATAAGGCACGGATTAGCTTTGAAGGAC
AGCACGCCAAGCCACAGTTGATTAGCCAAGTTGATATGACAGAGACTCCGCGTGTCAAAACTGGATTAGAAGAGTTTAAT
CGTGTTTTGGGTGGTGGAATTGTTTCCGGTTCGCTGGTTTTGATTGGTGGAGATCCGGGAATTGGAAAATCAACGCTACT
GCTACAAATTTCTGGTCAATTAAGCGAAAAAAAGCATCGCGTGTTGTATGTTTCAGGAGAAGAAAGTGCGGCCCAAATCA
AAATGCGGGCCGATCGCTTGAATGTTGCAAGTGAAAACTTTTATTTGTTTCCAGAAACAGATATGAATAGCATTCAAGCT
GCAATCAAAGAACTTAAACCAACTTATGTCGTCATCGATTCTATTCAAACGATGCAGGAGCCAGACATTCAATCTACAGT
TGGTAGTGTGGCTCAGGTACGTGAAATTACAGCTGAATTGATGCAAATTGCCAAAACAAACAATATTACGATTTTTATCG
TGGGTCACGTGACCAAAGGCGGTGCCATTGCTGGTCCCAAAATTTTGGAGCATATGGTAGATACTGTTTTGTATTTTGAA
GGTGATTTGCATCACACGTACCGAATTCTACGAGCGGTTAAGAATCGATTTGGTTCAACAAACGAGTTAGGCATCTTTGA
AATGCGCGAGACAGGTTTAACCGAGGTAGCCAATCCTTCTGAGATCTTTTTAGAGGAACGTTTGAAAGACGCAACTGGTT
CCGCAATTGTGGTGTCAATGGAAGGTACGCGTCCTATTTTGGTAGAAGTCCAGGCTCTAATTACGCCGACAACCTTTGGA
AATGCTAAGCGAACGGCTAGCGGTTTGGATCATAATCGTGTTTCGTTGATCATGGCCGTGCTTGAAAAAAGAGCTAATTT
TCTTTTACAAAATCAGGATGCCTATTTAAAGGCGGCTGGTGGCGTAAAATTAGACGAGCCAGCGATTGATTTAGCCATTG
CGATTAGTATTGCTTCAAGTTATCGGAACAAAGGGACAGATCCAATGGATTCGTTTGTGGGTGAAATTGGATTGACTGGT
GAAATTCGCCGGGTAAATCGAATTGAGCAACGTGTGGCAGAAGCTCAAAAACTAGGTTTCAAACGGATCTATGTACCAAA
GAACAATTTGCAGGGGTGGACACCACCGACTGGTATTCAGGTTGTAGGAGTGGCTACTTTAAGTGAAGCGCTGCATAAGA
TTTTTAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

68.571

99.781

0.684
  radA Streptococcus mitis NCTC 12261

68.352

99.781

0.682
  radA Streptococcus pneumoniae Rx1

68.352

99.781

0.682
  radA Streptococcus pneumoniae TIGR4

68.352

99.781

0.682
  radA Streptococcus pneumoniae D39

68.352

99.781

0.682
  radA Streptococcus pneumoniae R6

68.352

99.781

0.682
  radA Bacillus subtilis subsp. subtilis str. 168

67.108

99.342

0.667

Multiple sequence alignment