Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3Y95_RS01100 Genome accession   NZ_OZ061245
Coordinates   222140..223951 (-) Length   603 a.a.
NCBI ID   WP_367296739.1    Uniprot ID   -
Organism   Loigolactobacillus coryniformis isolate Loigolactobacillus coryniformis CIRM-BIA2685     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 217140..228951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y95_RS01085 - 218720..219331 (+) 612 WP_367296736.1 TMEM175 family protein -
  AB3Y95_RS01090 - 219488..220633 (+) 1146 WP_367296737.1 hypothetical protein -
  AB3Y95_RS01095 - 221230..221916 (-) 687 WP_367296738.1 phosphatase PAP2 family protein -
  AB3Y95_RS01100 pepF 222140..223951 (-) 1812 WP_367296739.1 oligoendopeptidase F Regulator
  AB3Y95_RS01105 - 224165..224818 (-) 654 WP_367296740.1 LysM peptidoglycan-binding domain-containing protein -
  AB3Y95_RS01110 - 225450..226646 (+) 1197 WP_367296741.1 MFS transporter -
  AB3Y95_RS01115 - 226749..227702 (-) 954 WP_367296742.1 hypothetical protein -
  AB3Y95_RS01120 - 227828..228031 (-) 204 WP_367296743.1 hypothetical protein -
  AB3Y95_RS01125 - 228015..228656 (-) 642 WP_367296744.1 hypothetical protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68685.74 Da        Isoelectric Point: 5.1062

>NTDB_id=1165579 AB3Y95_RS01100 WP_367296739.1 222140..223951(-) (pepF) [Loigolactobacillus coryniformis isolate Loigolactobacillus coryniformis CIRM-BIA2685]
MSTKTLPTREQVPTELTWDLTTVYPSDTDWENAFKEITTLGQDAAKLKGTLGDSARDLSDGLDQIFDLYRKLEKLYVYAS
LKHNQDNDNPTYQGMDQRAGALVAQVSAQVSFLEPEILAIPADELKNYIDSSTNLQIYQHYLEQVTATRKHVLSAEAEEL
LAGASDVFDASAATFNVLNDVDLPFPTVKDAQGNDVELSQGVYGTLIESTNRDVRKQAFQQLYKVYRQFRNTLASTLSSH
IKMHNYQARVHHYDSARQAALSANHIPESVYDTLVAEVEKNLPLLHRYVALRKKILGVDQLHMYDMYTPLTGEPSLSYTY
DEAKAEVLKATKVLGREYTSIVQEAFDTRWIDVVENKGKTSGAYSSGMYDTNPYILLNWQNNLNNLYTLVHEMGHSVHSH
YTHHNQPYVYGDYAIFVAEIASTTNENLLTDYLLKQQTDPRTRAYILNYYLDGFKGTIFRQTQFAEFEHFIHTEDAKGVP
LTAEHLSDYYGKLNQKYYGPAVENDPEIALEWSRIPHFYFNYYVYQYATGFAAATTLADKIINGERADRNAYINYLKSGS
SAYPIAIMQKAGVDMTQPAYLEQAFKVFEQRVNELETLLKNLD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1165579 AB3Y95_RS01100 WP_367296739.1 222140..223951(-) (pepF) [Loigolactobacillus coryniformis isolate Loigolactobacillus coryniformis CIRM-BIA2685]
ATGTCAACGAAAACATTACCTACGCGTGAGCAGGTGCCCACAGAACTAACTTGGGATCTGACCACGGTTTACCCCAGTGA
TACAGATTGGGAGAACGCTTTTAAAGAAATCACAACGCTGGGGCAGGATGCCGCTAAACTTAAAGGTACCCTTGGCGATA
GCGCACGCGATCTAAGCGACGGTTTGGATCAGATTTTTGATCTTTATCGTAAACTAGAAAAATTATACGTTTATGCTAGT
TTGAAACATAACCAAGATAACGATAACCCCACTTATCAAGGTATGGATCAACGAGCTGGTGCATTAGTAGCACAAGTATC
TGCTCAGGTTTCCTTTTTAGAACCAGAAATTTTAGCGATTCCGGCTGATGAACTGAAAAATTATATTGATAGCAGCACTA
ATTTGCAGATTTACCAACATTACTTAGAACAAGTTACGGCAACGCGTAAACATGTGCTTTCCGCTGAAGCCGAAGAATTA
TTGGCTGGTGCTAGCGATGTTTTTGATGCTTCTGCCGCAACGTTTAATGTCTTGAACGATGTTGACCTACCATTTCCAAC
CGTTAAAGATGCTCAGGGCAATGATGTTGAATTGTCACAAGGTGTTTATGGAACTTTGATCGAATCAACCAATCGTGACG
TACGTAAGCAGGCGTTCCAACAACTCTATAAAGTTTACCGCCAGTTCCGTAATACACTGGCTTCAACTTTGTCCTCACAC
ATTAAGATGCACAACTACCAAGCGCGAGTTCATCACTATGATTCTGCCCGCCAAGCCGCCCTTTCTGCCAATCATATTCC
CGAAAGCGTTTATGATACGCTAGTCGCTGAGGTCGAAAAAAATCTACCGTTACTACATCGCTATGTGGCTTTGCGCAAAA
AGATCCTTGGGGTCGATCAACTCCACATGTACGATATGTATACGCCTTTGACTGGTGAACCTAGCCTATCTTACACTTAC
GACGAAGCTAAAGCTGAAGTATTGAAGGCCACCAAAGTGCTGGGTCGTGAATACACCAGTATCGTACAAGAAGCTTTTGA
TACCCGGTGGATCGATGTCGTTGAGAATAAAGGCAAAACAAGTGGTGCCTATTCATCCGGCATGTACGACACTAATCCCT
ACATTTTATTAAACTGGCAGAATAATTTAAACAATCTGTACACGTTAGTTCATGAAATGGGGCATTCAGTCCACAGCCAT
TATACGCACCATAATCAGCCATACGTGTATGGTGACTACGCTATTTTTGTCGCCGAGATTGCTTCAACAACCAACGAAAA
TTTGTTAACTGATTACCTATTAAAGCAACAAACTGATCCACGGACGCGGGCCTACATTCTGAATTATTATTTAGATGGCT
TCAAAGGCACAATTTTCCGGCAAACCCAATTCGCTGAATTCGAGCACTTCATTCATACCGAAGATGCTAAGGGCGTACCG
TTGACTGCAGAACATTTATCTGATTACTATGGTAAATTGAACCAGAAGTATTACGGTCCAGCAGTCGAAAATGATCCCGA
GATTGCTTTGGAGTGGTCACGGATCCCTCATTTCTACTTCAATTACTACGTTTATCAGTACGCAACTGGCTTTGCGGCTG
CCACAACGCTAGCTGATAAAATCATTAATGGTGAACGTGCTGACCGTAACGCCTACATTAATTATTTGAAGTCTGGTAGT
TCCGCTTACCCAATTGCGATCATGCAAAAGGCTGGCGTTGATATGACGCAACCAGCTTACTTGGAACAAGCATTTAAAGT
CTTCGAGCAACGTGTAAACGAATTAGAAACACTATTAAAAAATTTAGACTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-185)

Peptidase family M3 (Peptidase_M3)

(206-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.547

98.176

0.526

Multiple sequence alignment