Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3228_RS03190 Genome accession   NZ_OZ061239
Coordinates   675472..677283 (+) Length   603 a.a.
NCBI ID   WP_367375950.1    Uniprot ID   -
Organism   Lentilactobacillus kefiri isolate Lentilactobacillus kefiri CIRM-BIA2556     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 670472..682283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3228_RS03170 - 670544..671236 (+) 693 WP_367375949.1 response regulator transcription factor -
  AB3228_RS03175 - 671233..672543 (+) 1311 WP_056981979.1 cell wall metabolism sensor histidine kinase WalK -
  AB3228_RS03180 - 672612..674144 (-) 1533 WP_056981980.1 gamma-glutamylcysteine synthetase -
  AB3228_RS03185 - 674299..675438 (+) 1140 WP_056981982.1 competence protein CoiA -
  AB3228_RS03190 pepF 675472..677283 (+) 1812 WP_367375950.1 oligoendopeptidase F Regulator
  AB3228_RS03195 - 677343..677972 (-) 630 WP_056982103.1 DsbA family protein -
  AB3228_RS03200 - 678186..678854 (+) 669 WP_056982104.1 GTP pyrophosphokinase family protein -
  AB3228_RS03205 - 678832..679644 (+) 813 WP_056982105.1 NAD kinase -
  AB3228_RS03210 - 679637..680533 (+) 897 WP_054769833.1 RluA family pseudouridine synthase -
  AB3228_RS03215 - 680647..681495 (+) 849 WP_367375951.1 methyltransferase domain-containing protein -
  AB3228_RS03220 - 681512..682024 (+) 513 WP_056982108.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69622.67 Da        Isoelectric Point: 4.8155

>NTDB_id=1165555 AB3228_RS03190 WP_367375950.1 675472..677283(+) (pepF) [Lentilactobacillus kefiri isolate Lentilactobacillus kefiri CIRM-BIA2556]
MAKTQELPLRKDVPEKLTWDLTTVYSSDADFEKDFTEVKADSKKFAGLSGTIEKDAESLLKATEDLLKLSRTLEKVYVYS
QLKNDQDTSEDKYQAMYSRSEALAAQFGAATAWFEPELLKISDDKMAQFYKDEPKLTDYKRFYDQTFERRDHILGNDVEE
VLAGADDIFSSGEKTFGILDNTDLSFPAVTDENGNKVKLSQGVYGILLESTDQSVRKEAFEKLYEVYDQFQHTLASTLTT
NVKNHNFKANIRHYNSALEAALAGNEVSTDVYNNLIKVVNKHLDFLHRYVALRKKILGLDELHMYDMYTSLVGNQSPKYT
FEQSKKIALEALQVMGPDYVSHVKEEFNGRWIDVVENQFKRSGGYSSGTYDTNPFILLNWKDNLDNLYTLIHETGHSMHS
YYSHHNQPYQYGDYSIFVAEIASTTNENILTDYLLNKFKDDDQMKKFILNYYLDGFKGTVFRQTQFAEFEQYIHEQDAQG
QPLTAKFMDQYYLDLNKKYYGDAVVSDPQIALEWARIPHFYYNFYVYQYSTGFAAASTLADGIVNGTQDNIDKYLNYLKS
GSSDTPTNVMKKAGVDMTKPDYLEKAFQIFEDRLNEFERLYNK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1165555 AB3228_RS03190 WP_367375950.1 675472..677283(+) (pepF) [Lentilactobacillus kefiri isolate Lentilactobacillus kefiri CIRM-BIA2556]
ATGGCTAAAACACAAGAACTGCCTCTTAGAAAAGATGTTCCTGAAAAATTGACTTGGGACTTAACCACCGTTTATTCGTC
CGATGCAGACTTTGAGAAGGACTTTACTGAAGTGAAGGCTGATTCAAAGAAGTTTGCCGGGCTGTCCGGCACCATTGAAA
AAGACGCCGAATCATTACTCAAGGCGACCGAAGATTTGCTGAAACTCAGCCGGACGTTGGAAAAAGTGTATGTTTATTCT
CAGTTGAAGAATGATCAGGATACCAGCGAGGACAAATACCAAGCAATGTATTCCCGTTCAGAGGCTTTAGCCGCCCAATT
TGGTGCGGCGACTGCATGGTTTGAACCGGAACTGTTGAAGATTTCCGATGACAAGATGGCCCAATTTTATAAGGACGAGC
CTAAATTAACTGACTATAAACGTTTTTACGACCAGACTTTTGAACGTCGTGACCATATTTTAGGCAACGACGTCGAAGAA
GTCCTTGCCGGAGCTGACGATATCTTCTCCTCAGGTGAAAAGACTTTTGGCATTTTGGATAATACTGATTTGTCATTCCC
AGCTGTCACTGATGAAAATGGCAACAAGGTCAAGCTCTCACAGGGTGTTTATGGCATCTTGCTGGAATCCACCGATCAAA
GTGTTCGTAAAGAAGCCTTCGAGAAGTTGTACGAAGTTTATGATCAATTTCAGCATACATTGGCATCAACTTTGACGACC
AACGTCAAAAATCATAATTTTAAAGCCAACATTCGCCACTATAATAGTGCTTTGGAAGCTGCTCTGGCAGGCAATGAAGT
TTCAACTGATGTCTACAATAATTTAATTAAGGTTGTCAATAAGCACCTGGATTTTTTGCATCGATATGTTGCTTTGAGAA
AAAAGATTCTCGGTCTCGATGAGCTGCATATGTATGACATGTATACTTCTTTAGTGGGTAATCAATCACCAAAATATACA
TTTGAGCAGTCCAAAAAGATTGCTTTGGAGGCCCTTCAGGTTATGGGCCCCGACTATGTCAGCCACGTTAAAGAGGAATT
TAACGGGCGTTGGATTGACGTTGTTGAAAACCAGTTCAAGCGAAGTGGGGGCTATTCATCCGGAACATACGATACCAATC
CATTTATCTTACTGAACTGGAAGGACAACCTGGATAACTTGTATACTTTGATTCATGAAACCGGTCATAGTATGCACAGT
TACTACTCACATCATAATCAACCATATCAGTATGGGGATTATTCTATTTTTGTCGCAGAAATTGCCTCAACGACCAATGA
AAATATCTTAACGGACTATTTGCTGAACAAATTCAAAGATGACGACCAGATGAAGAAATTCATTTTGAATTATTATCTGG
ATGGATTTAAGGGAACCGTCTTCCGTCAAACCCAGTTTGCCGAATTTGAACAGTATATCCATGAACAGGATGCCCAAGGC
CAACCGTTGACAGCCAAGTTTATGGATCAGTATTATCTTGATTTGAATAAGAAATATTATGGTGATGCGGTTGTTTCGGA
TCCACAGATTGCGCTGGAATGGGCCCGAATTCCTCATTTCTATTACAATTTCTATGTTTACCAATACTCGACCGGGTTTG
CTGCGGCCTCAACGTTAGCTGACGGCATTGTCAACGGTACCCAAGACAACATTGATAAATATTTGAATTATTTGAAATCA
GGCAGTTCCGATACGCCAACCAATGTCATGAAAAAAGCCGGGGTTGATATGACCAAGCCCGACTATCTCGAAAAAGCATT
CCAGATTTTTGAAGATCGTTTGAATGAATTCGAACGGTTGTATAACAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-588)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.704

98.507

0.529

Multiple sequence alignment