Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   AB3235_RS07035 Genome accession   NZ_OZ061221
Coordinates   1457446..1458489 (-) Length   347 a.a.
NCBI ID   WP_044926157.1    Uniprot ID   -
Organism   Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1452446..1463489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3235_RS07015 holA 1452816..1453844 (-) 1029 WP_367377973.1 DNA polymerase III subunit delta -
  AB3235_RS07020 - 1453973..1456129 (-) 2157 WP_367377974.1 DNA internalization-related competence protein ComEC/Rec2 -
  AB3235_RS07025 - 1456198..1456686 (-) 489 WP_010780710.1 ComE operon protein 2 -
  AB3235_RS07030 - 1456716..1457324 (-) 609 WP_367377975.1 helix-hairpin-helix domain-containing protein -
  AB3235_RS07035 sepM 1457446..1458489 (-) 1044 WP_044926157.1 SepM family pheromone-processing serine protease Regulator
  AB3235_RS07040 coaD 1458479..1458973 (-) 495 WP_010780707.1 pantetheine-phosphate adenylyltransferase -
  AB3235_RS07045 rsmD 1458975..1459529 (-) 555 WP_086303756.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB3235_RS07050 - 1459668..1460015 (-) 348 WP_174293652.1 YlbG family protein -
  AB3235_RS07055 - 1460002..1460427 (-) 426 WP_010780704.1 YlbF family regulator -
  AB3235_RS07060 - 1460429..1461538 (-) 1110 WP_367377976.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38330.11 Da        Isoelectric Point: 6.8877

>NTDB_id=1165533 AB3235_RS07035 WP_044926157.1 1457446..1458489(-) (sepM) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
MKNNKLVKRLLLIFLALIVVACIIVPIPYYIEQPGETINLKELITVNDKKDEHKGSFSLTSVGIRRATVFTALRSKMEPF
NEIISADELTGGASDDEYMQIQKFNMETSQNFAIEQALKLANKPYKMEYKGVYVLGVEKNSNFAGKINVGDTVTKADGKT
FTSSEDFMKYVKSQKVGQEMKVTYVHNGETKEATEKLIKLPTDKKPGIGITLTDHTEIDSQEKVKVDAGDIGGPSAGLMF
TLEIYEQLIDKDLRHGEKIAGTGTINANGEVGRIGGIDKKVASAAADKNKVFFAPDDEITKEMKEAQPGIKSNYQEAKAA
AKKIDTEMKIVPVKTVKDALDYLETMK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1165533 AB3235_RS07035 WP_044926157.1 1457446..1458489(-) (sepM) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
GTGAAAAATAATAAACTTGTCAAACGATTACTGCTTATTTTTTTAGCCTTAATAGTCGTCGCCTGTATAATTGTGCCGAT
CCCTTACTATATTGAACAGCCCGGCGAGACCATCAACTTAAAGGAATTGATCACGGTCAATGATAAGAAGGACGAGCATA
AAGGCTCCTTCAGTCTGACCTCTGTTGGAATTCGTCGAGCAACAGTATTTACGGCGTTACGATCAAAAATGGAACCCTTT
AATGAAATTATTTCTGCAGATGAATTGACTGGCGGTGCCAGTGATGATGAATACATGCAGATTCAAAAGTTCAATATGGA
GACGTCGCAAAACTTTGCGATCGAGCAGGCATTGAAACTTGCGAACAAGCCTTATAAGATGGAATACAAAGGTGTATATG
TGCTAGGTGTAGAAAAAAATTCAAACTTCGCTGGAAAAATCAATGTTGGCGATACCGTAACCAAAGCGGACGGCAAAACT
TTTACTAGCAGTGAAGACTTCATGAAATATGTCAAATCTCAAAAAGTAGGTCAAGAAATGAAAGTGACCTATGTCCATAA
TGGCGAGACCAAGGAAGCGACAGAGAAATTGATCAAGCTTCCGACTGACAAGAAGCCAGGAATCGGTATTACACTGACGG
ACCACACAGAGATCGATTCACAGGAAAAAGTGAAAGTCGATGCAGGTGACATTGGCGGTCCTTCCGCAGGCTTGATGTTC
ACATTAGAAATTTACGAACAATTGATCGATAAAGACCTGCGTCATGGCGAAAAAATTGCCGGAACCGGGACTATAAACGC
CAATGGCGAAGTTGGCCGGATTGGCGGGATCGATAAAAAAGTCGCCAGTGCAGCCGCAGATAAGAATAAGGTTTTCTTCG
CTCCAGATGATGAGATCACGAAGGAAATGAAAGAAGCACAGCCAGGAATCAAATCAAACTATCAAGAAGCAAAAGCTGCG
GCTAAAAAAATAGACACAGAAATGAAAATTGTTCCTGTAAAAACAGTAAAAGACGCCTTGGATTATTTAGAGACGATGAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(224-312)

PDZ domain (PDZ_2)

(128-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.406

99.424

0.481

Multiple sequence alignment