Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3235_RS04395 Genome accession   NZ_OZ061221
Coordinates   909600..911417 (+) Length   605 a.a.
NCBI ID   WP_367377736.1    Uniprot ID   -
Organism   Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 904600..916417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3235_RS04375 - 905550..906269 (-) 720 WP_367377734.1 HAD family hydrolase -
  AB3235_RS04380 spxA 907047..907445 (+) 399 WP_010781381.1 transcriptional regulator SpxA -
  AB3235_RS04385 - 907647..908291 (+) 645 WP_010781380.1 adaptor protein MecA -
  AB3235_RS04390 - 908431..909429 (+) 999 WP_367377735.1 competence protein CoiA -
  AB3235_RS04395 pepF 909600..911417 (+) 1818 WP_367377736.1 oligoendopeptidase F Regulator
  AB3235_RS04400 - 911708..912886 (+) 1179 WP_086305626.1 class C sortase -
  AB3235_RS04405 - 912888..914066 (+) 1179 WP_367377737.1 class C sortase -
  AB3235_RS04410 - 914101..914751 (-) 651 WP_010781375.1 DsbA family protein -
  AB3235_RS04415 - 914748..915356 (-) 609 WP_367377738.1 CYTH domain-containing protein -
  AB3235_RS04420 - 915562..916227 (+) 666 WP_010781373.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69407.07 Da        Isoelectric Point: 4.6394

>NTDB_id=1165526 AB3235_RS04395 WP_367377736.1 909600..911417(+) (pepF) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
MSEAKQLPTRQEVPAELTWDLTKIFVDAAAFEKKFQDLANELTEVTKIKGSLNQGATEFLMAIDYILDIYRKAEVIYVYA
HLKNDEDTANTTNQALYARASSLIAQVSEAVSWFEPEMLQLSDQEIWAFFEAEPKLELYRHFVEQIISERAHVLPAEQEA
LLAGASEIFSSSADTFSIMNNADLKFPVVKNEEGENVQLTHGVYGQLLESTDRTVREEAFKALYSVYHQFRNTLATTLST
HVKGHNYKAKVRGYTSARQAALSGNHIPEDVYETLTLVVNQYLPLLHRYVELRKELLGLPELHMYDLYTPLLAEAPMKFT
YEEAQEKALEALKPLGEEYLDVVKKAFAERWIDVVENQGKRSGAYSSGAYDTQPYILLNWHDRLDELYTLVHEMGHSAHS
YFTRHTQPYVYGDYSIFLAEIASTTNENLLTSYLLETEKDPKIRAYIINHYLDGFKGTIFRQTQFAEFEHFIHTEDAAGT
PLTSEHLSKFYGELNAKYYGPIVVNDEEIKDEWARIPHFYYNYYVYQYATGFSAASALAKRIVEGEPDALDKYLTYLKSG
SSDYPIEVMKKAGVDMTQPTYIEDAMEIFARRLDELEELVAELKE

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1165526 AB3235_RS04395 WP_367377736.1 909600..911417(+) (pepF) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
ATGAGTGAGGCAAAGCAATTACCAACGCGTCAAGAAGTACCAGCGGAGTTGACTTGGGATTTAACCAAAATCTTTGTTGA
TGCTGCTGCTTTTGAGAAAAAATTTCAAGATTTAGCGAATGAATTGACCGAAGTAACCAAGATCAAGGGAAGTCTAAATC
AAGGAGCAACAGAATTTTTAATGGCGATTGACTATATTTTGGATATTTATCGCAAAGCGGAGGTCATTTATGTCTATGCT
CATTTGAAAAACGATGAAGACACGGCTAATACGACCAACCAAGCACTTTACGCCAGAGCATCTAGTCTGATCGCGCAGGT
CAGTGAAGCGGTTAGCTGGTTTGAACCGGAAATGTTGCAGCTTTCGGACCAAGAAATTTGGGCTTTCTTTGAGGCTGAAC
CAAAACTTGAGTTGTACCGTCACTTTGTTGAACAAATCATTTCAGAAAGAGCCCACGTTTTACCTGCTGAGCAAGAAGCC
TTGTTAGCTGGAGCCAGTGAGATTTTTAGCAGTTCAGCGGATACTTTTTCAATTATGAATAACGCGGATTTGAAATTCCC
AGTTGTAAAAAATGAAGAAGGGGAAAATGTTCAATTGACTCATGGGGTCTATGGACAGTTACTCGAAAGTACGGATCGCA
CAGTTCGCGAGGAGGCATTTAAGGCCTTATATTCCGTTTATCATCAATTTCGAAATACGCTGGCAACAACATTAAGCACA
CATGTAAAAGGGCATAATTATAAAGCAAAAGTACGCGGTTATACGTCTGCCCGCCAAGCCGCATTGAGTGGGAATCATAT
TCCAGAGGATGTTTATGAAACATTGACGCTCGTGGTCAACCAATATTTACCACTGCTGCATCGGTATGTGGAATTGCGTA
AAGAATTGTTGGGTCTACCAGAGTTGCATATGTATGACCTGTACACACCACTATTAGCAGAAGCACCAATGAAGTTTACT
TATGAAGAAGCGCAAGAAAAAGCGCTTGAAGCGTTAAAACCTTTAGGGGAAGAATACTTAGATGTCGTCAAAAAAGCATT
TGCAGAGCGCTGGATCGACGTTGTAGAAAACCAAGGCAAACGCAGCGGTGCCTATTCTTCTGGGGCCTATGATACACAAC
CGTACATTCTTTTAAACTGGCACGACCGATTAGATGAGCTTTACACACTCGTCCATGAAATGGGCCACAGTGCCCATAGC
TATTTTACCCGTCACACACAGCCTTATGTCTATGGAGATTATTCAATCTTTTTAGCAGAAATCGCGTCTACGACGAATGA
AAATCTGCTGACGAGCTACTTATTAGAGACGGAGAAAGATCCGAAAATTCGTGCCTATATTATCAATCATTACTTAGATG
GATTTAAAGGAACCATTTTCCGTCAAACCCAGTTTGCTGAATTCGAGCACTTTATTCATACGGAAGATGCGGCTGGCACA
CCACTGACTAGCGAACACCTTAGCAAGTTTTATGGTGAACTGAATGCGAAATACTATGGACCGATCGTTGTTAACGATGA
GGAAATAAAAGACGAATGGGCAAGAATTCCGCATTTCTACTATAATTATTATGTTTATCAGTATGCGACAGGTTTTTCAG
CGGCAAGCGCATTAGCGAAACGGATCGTTGAAGGGGAGCCAGATGCTTTAGACAAGTACTTAACGTATTTAAAATCCGGC
AGCAGTGATTATCCGATCGAAGTAATGAAAAAAGCGGGCGTGGATATGACACAACCGACATATATCGAGGATGCTATGGA
AATTTTCGCTCGCCGGTTGGATGAGTTAGAAGAATTGGTAGCAGAATTAAAAGAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.899

97.851

0.537

Multiple sequence alignment