Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AB3235_RS03600 Genome accession   NZ_OZ061221
Coordinates   741746..742468 (-) Length   240 a.a.
NCBI ID   WP_367377670.1    Uniprot ID   -
Organism   Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 736746..747468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3235_RS03575 - 737608..738168 (+) 561 WP_010781542.1 TetR/AcrR family transcriptional regulator -
  AB3235_RS03580 - 738288..738725 (+) 438 WP_010781541.1 DUF948 domain-containing protein -
  AB3235_RS03585 - 738728..739294 (+) 567 WP_010781540.1 YtxH domain-containing protein -
  AB3235_RS03590 - 739377..740477 (-) 1101 WP_114523995.1 Xaa-Pro peptidase family protein -
  AB3235_RS03595 ccpA 740673..741677 (+) 1005 WP_367377669.1 catabolite control protein A -
  AB3235_RS03600 treR 741746..742468 (-) 723 WP_367377670.1 trehalose operon repressor Regulator
  AB3235_RS03605 treP 742863..744809 (+) 1947 WP_367377671.1 PTS system trehalose-specific EIIBC component -
  AB3235_RS03610 treC 744825..746447 (+) 1623 WP_367377672.1 alpha,alpha-phosphotrehalase -
  AB3235_RS03615 - 746478..746984 (-) 507 WP_367377673.1 QueT transporter family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27867.85 Da        Isoelectric Point: 8.0019

>NTDB_id=1165522 AB3235_RS03600 WP_367377670.1 741746..742468(-) (treR) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
MKNYEVIYQAIERGILKEVYEAGSYLPSENKLRQTYHVSRDTIRKALSLLMANGYIQKIQGKGSLVLKREQLRFPVSGLT
SYKELQNSYGYESNTEVVSLKKIEIDQKIARITGFEVGSICWELIRTRAIDQKKVILDKDILLTTIVPELDTEIAKDSIY
RYLENQLGLNISFAEKEITIDALTGEDRELLDLNQHDINIVSVKSRVFTSDARQFQYTESRHQVDKFRFFDFARRHPSTM

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1165522 AB3235_RS03600 WP_367377670.1 741746..742468(-) (treR) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
ATGAAAAATTATGAAGTGATCTACCAAGCGATTGAACGGGGAATTTTAAAGGAAGTATATGAAGCGGGTTCTTACTTACC
CAGTGAAAACAAACTTCGTCAGACTTACCATGTTTCTCGGGATACGATTCGCAAAGCGTTGTCGCTTTTAATGGCGAATG
GCTACATTCAAAAAATTCAAGGCAAGGGCTCCCTCGTCTTAAAGCGAGAGCAATTACGTTTCCCTGTATCCGGTCTGACC
AGCTACAAAGAATTACAAAATTCTTACGGCTATGAAAGCAACACTGAGGTTGTCAGCCTAAAAAAAATTGAGATCGACCA
AAAAATTGCTCGTATAACCGGGTTTGAAGTAGGATCTATCTGCTGGGAGCTGATCCGCACTCGAGCCATTGATCAAAAAA
AAGTGATCCTCGATAAGGATATTCTGCTGACAACGATCGTTCCTGAACTGGATACTGAAATCGCGAAGGATTCGATCTAT
CGTTATCTCGAGAATCAATTAGGTCTCAATATCTCCTTTGCAGAAAAAGAAATCACGATTGATGCTTTGACTGGAGAGGA
CCGCGAGCTGCTTGATTTGAATCAGCATGACATCAATATCGTTTCCGTAAAAAGTCGGGTCTTCACTAGTGACGCTCGTC
AATTTCAATATACCGAGAGTCGCCATCAAGTCGACAAATTTCGCTTTTTTGATTTTGCACGCCGACACCCATCGACCATG
TAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50

98.333

0.492

Multiple sequence alignment