Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3235_RS00775 Genome accession   NZ_OZ061221
Coordinates   154939..156312 (+) Length   457 a.a.
NCBI ID   WP_010782115.1    Uniprot ID   R2XG47
Organism   Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 149939..161312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3235_RS00755 - 149962..150708 (+) 747 WP_367377430.1 TIGR03915 family putative DNA repair protein -
  AB3235_RS00760 - 150885..151841 (+) 957 WP_010782118.1 cation diffusion facilitator family transporter -
  AB3235_RS00765 - 152357..154156 (+) 1800 WP_316407084.1 glycerophosphodiester phosphodiesterase -
  AB3235_RS00770 - 154405..154911 (+) 507 WP_010782116.1 dUTP diphosphatase -
  AB3235_RS00775 radA 154939..156312 (+) 1374 WP_010782115.1 DNA repair protein RadA Machinery gene
  AB3235_RS00780 - 156398..157552 (+) 1155 WP_367377431.1 PIN/TRAM domain-containing protein -
  AB3235_RS00785 gltX 157650..159107 (+) 1458 WP_301516970.1 glutamate--tRNA ligase -
  AB3235_RS00790 epsC 159785..160318 (+) 534 WP_010782112.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49975.48 Da        Isoelectric Point: 7.7029

>NTDB_id=1165513 AB3235_RS00775 WP_010782115.1 154939..156312(+) (radA) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
MAKKSKTQFICQECGYVSPKYLGRCPSCGNWNTMVEEVEPNHPEDRRNRVSLTGERATPTKLKDVVFKKETRIQTELAEL
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSHQLAATGGNVLYVSGEESAQQIKLRAERLGSSDTDFYLYAETDMGEIS
RTIENLKPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGNIAGPRMLEHMVDTVLYF
EGEKHHSFRILRAVKNRFGSTNEIGIFEMRERGLVEVANPSQVFLEERLEGATGSAIVVAMEGSRPILVEVQALVTPTVF
GNAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAVAIAIASSYKENGTEATECFIGEIGLT
GEIRRVNSIEQRVKEAGKLGFKKIYLPKNNMGDWKPPKGIELIPVATLGETLRKVFR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1165513 AB3235_RS00775 WP_010782115.1 154939..156312(+) (radA) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
TTGGCAAAAAAATCCAAGACACAGTTTATCTGTCAGGAATGTGGGTATGTTTCGCCTAAATATTTAGGTCGGTGCCCGAG
TTGCGGCAATTGGAATACGATGGTGGAGGAAGTGGAACCCAATCACCCTGAAGACCGAAGAAATCGTGTCAGTCTAACGG
GAGAACGTGCGACTCCGACCAAGTTAAAAGATGTCGTCTTTAAAAAAGAAACGCGGATTCAAACAGAATTAGCAGAATTG
AATCGGGTTTTAGGTGGCGGCGTCGTTCCAGGGTCCTTGGTTTTGATCGGCGGAGATCCTGGGATCGGAAAGTCGACCTT
GCTGCTGCAAGTTTCGCATCAATTAGCGGCGACGGGGGGCAATGTGCTATACGTCTCGGGGGAAGAAAGCGCGCAGCAGA
TCAAGCTGCGGGCAGAACGCCTAGGGTCAAGCGACACGGATTTCTACCTGTATGCAGAGACAGACATGGGAGAGATCAGT
CGAACGATCGAGAATTTGAAGCCTGACTATGTAATCATCGACTCGATCCAAACCATGACCCAACCAGACATTACGAGTGT
GGCAGGCTCGGTCAGTCAGGTTCGTGAAACGACAGCCGAATTATTGAAGCTGGCGAAAACGAACGGGATCGCCATTTTTA
TCGTTGGTCACGTTACAAAAGAAGGAAATATCGCCGGTCCGCGTATGTTGGAGCATATGGTAGATACAGTGCTGTATTTC
GAAGGAGAGAAGCACCACAGCTTCCGTATCCTGCGAGCAGTCAAGAACCGTTTTGGCTCGACCAACGAGATCGGGATCTT
TGAAATGCGGGAGCGCGGCCTGGTAGAAGTCGCGAATCCCTCTCAAGTGTTCTTAGAGGAGCGCTTGGAGGGGGCGACTG
GATCAGCGATCGTTGTTGCGATGGAAGGCAGCCGGCCCATTTTGGTCGAAGTGCAGGCCTTAGTCACACCCACGGTTTTC
GGCAATGCCAAGCGAACGACGACGGGGCTGGATTTCAACCGCGTGTCGTTGATCATGGCCGTTTTAGAAAAACGTGCCGG
ACTGCTGCTGCAAAATCAGGATGCCTATTTGAAGGCAGCCGGCGGCGTAAAATTAAATGAGCCCGCGATCGATTTGGCGG
TAGCGATCGCCATTGCTTCCAGTTACAAAGAAAATGGAACGGAAGCGACAGAGTGCTTTATCGGTGAAATTGGTCTGACT
GGTGAGATTCGTCGGGTCAACAGCATCGAGCAGCGAGTAAAAGAAGCCGGCAAATTAGGATTCAAAAAAATCTATCTGCC
TAAAAATAATATGGGCGATTGGAAGCCGCCGAAAGGGATCGAATTGATTCCAGTGGCGACGCTAGGAGAAACATTAAGAA
AAGTATTCCGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

AAA domain (AAA_25)

(57-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R2XG47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.123

99.781

0.74
  radA Streptococcus mitis SK321

73.904

99.781

0.737
  radA Streptococcus pneumoniae Rx1

73.904

99.781

0.737
  radA Streptococcus pneumoniae D39

73.904

99.781

0.737
  radA Streptococcus pneumoniae R6

73.904

99.781

0.737
  radA Streptococcus pneumoniae TIGR4

73.904

99.781

0.737
  radA Bacillus subtilis subsp. subtilis str. 168

65.188

98.687

0.643

Multiple sequence alignment