Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU84_RS14650 Genome accession   NZ_OZ043945
Coordinates   3010850..3011479 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30859_5#62     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3005850..3016479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU84_RS14635 helD 3006092..3008146 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU84_RS14640 yccF 3008269..3008715 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU84_RS14645 yccS 3008725..3010887 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU84_RS14650 sxy/tfoX 3010850..3011479 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU84_RS14655 sulA 3011698..3012207 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU84_RS14660 ompA 3012563..3013615 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU84_RS14665 matP 3013691..3014143 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU84_RS14670 ycbZ 3014329..3016089 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1165007 ABGU84_RS14650 WP_000839151.1 3010850..3011479(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#62]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1165007 ABGU84_RS14650 WP_000839151.1 3010850..3011479(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#62]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment