Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU80_RS14600 Genome accession   NZ_OZ042069
Coordinates   3004201..3004830 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30859_5#40     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2999201..3009830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU80_RS14585 helD 2999443..3001497 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU80_RS14590 yccF 3001620..3002066 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU80_RS14595 yccS 3002076..3004238 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU80_RS14600 sxy/tfoX 3004201..3004830 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU80_RS14605 sulA 3005049..3005558 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU80_RS14610 ompA 3005914..3006966 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU80_RS14615 matP 3007042..3007494 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU80_RS14620 ycbZ 3007680..3009440 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164961 ABGU80_RS14600 WP_000839151.1 3004201..3004830(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#40]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164961 ABGU80_RS14600 WP_000839151.1 3004201..3004830(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#40]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment