Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU74_RS14570 Genome accession   NZ_OZ040756
Coordinates   2999083..2999712 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30859_5#287     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2994083..3004712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU74_RS14555 helD 2994325..2996379 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU74_RS14560 yccF 2996502..2996948 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU74_RS14565 yccS 2996958..2999120 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU74_RS14570 sxy/tfoX 2999083..2999712 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU74_RS14575 sulA 2999931..3000440 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU74_RS14580 ompA 3000796..3001848 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU74_RS14585 matP 3001924..3002376 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU74_RS14590 ycbZ 3002562..3004322 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164822 ABGU74_RS14570 WP_000839151.1 2999083..2999712(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#287]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164822 ABGU74_RS14570 WP_000839151.1 2999083..2999712(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#287]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment