Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU68_RS15595 Genome accession   NZ_OZ040490
Coordinates   3134039..3134668 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30602_1#64     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3129039..3139668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU68_RS15580 helD 3129281..3131335 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU68_RS15585 yccF 3131458..3131904 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU68_RS15590 yccS 3131914..3134076 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU68_RS15595 sxy/tfoX 3134039..3134668 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU68_RS15600 sulA 3134887..3135396 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU68_RS15605 ompA 3135752..3136804 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU68_RS15610 matP 3136880..3137332 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU68_RS15615 ycbZ 3137518..3139278 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164685 ABGU68_RS15595 WP_000839151.1 3134039..3134668(-) (sxy/tfoX) [Escherichia coli isolate 30602_1#64]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164685 ABGU68_RS15595 WP_000839151.1 3134039..3134668(-) (sxy/tfoX) [Escherichia coli isolate 30602_1#64]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment