Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU67_RS14890 Genome accession   NZ_OZ040465
Coordinates   3024062..3024691 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30859_5#29     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3019062..3029691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU67_RS14875 helD 3019304..3021358 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU67_RS14880 yccF 3021481..3021927 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU67_RS14885 yccS 3021937..3024099 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU67_RS14890 sxy/tfoX 3024062..3024691 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU67_RS14895 sulA 3024910..3025419 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU67_RS14900 ompA 3025775..3026827 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU67_RS14905 matP 3026903..3027355 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU67_RS14910 ycbZ 3027541..3029301 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164662 ABGU67_RS14890 WP_000839151.1 3024062..3024691(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#29]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164662 ABGU67_RS14890 WP_000839151.1 3024062..3024691(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#29]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment