Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU73_RS15415 Genome accession   NZ_OZ040331
Coordinates   3116581..3117210 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30224_1#305     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3111581..3122210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU73_RS15400 helD 3111823..3113877 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU73_RS15405 yccF 3114000..3114446 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU73_RS15410 yccS 3114456..3116618 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU73_RS15415 sxy/tfoX 3116581..3117210 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU73_RS15420 sulA 3117429..3117938 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU73_RS15425 ompA 3118294..3119346 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU73_RS15430 matP 3119422..3119874 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU73_RS15435 ycbZ 3120060..3121820 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164639 ABGU73_RS15415 WP_000839151.1 3116581..3117210(-) (sxy/tfoX) [Escherichia coli isolate 30224_1#305]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164639 ABGU73_RS15415 WP_000839151.1 3116581..3117210(-) (sxy/tfoX) [Escherichia coli isolate 30224_1#305]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment