Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU62_RS15605 Genome accession   NZ_OZ040274
Coordinates   3139430..3140059 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30345_1#220     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3134430..3145059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU62_RS15590 helD 3134672..3136726 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU62_RS15595 yccF 3136849..3137295 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU62_RS15600 yccS 3137305..3139467 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU62_RS15605 sxy/tfoX 3139430..3140059 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU62_RS15610 sulA 3140278..3140787 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU62_RS15615 ompA 3141143..3142195 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU62_RS15620 matP 3142271..3142723 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU62_RS15625 ycbZ 3142909..3144669 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164616 ABGU62_RS15605 WP_000839151.1 3139430..3140059(-) (sxy/tfoX) [Escherichia coli isolate 30345_1#220]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164616 ABGU62_RS15605 WP_000839151.1 3139430..3140059(-) (sxy/tfoX) [Escherichia coli isolate 30345_1#220]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment