Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU48_RS15015 Genome accession   NZ_OZ040192
Coordinates   3053833..3054462 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30859_5#32     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3048833..3059462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU48_RS15000 helD 3049075..3051129 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU48_RS15005 yccF 3051252..3051698 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU48_RS15010 yccS 3051708..3053870 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU48_RS15015 sxy/tfoX 3053833..3054462 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU48_RS15020 sulA 3054681..3055190 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU48_RS15025 ompA 3055546..3056598 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU48_RS15030 matP 3056674..3057126 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU48_RS15035 ycbZ 3057312..3059072 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164547 ABGU48_RS15015 WP_000839151.1 3053833..3054462(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#32]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164547 ABGU48_RS15015 WP_000839151.1 3053833..3054462(-) (sxy/tfoX) [Escherichia coli isolate 30859_5#32]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment