Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABNT22_RS01430 Genome accession   NZ_OZ040189
Coordinates   305532..306893 (+) Length   453 a.a.
NCBI ID   WP_348715709.1    Uniprot ID   -
Organism   Tenacibaculum polynesiense isolate ena-SAMPLE-TAB-13-05-2024-13:56:06:370-140306     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 300532..311893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNT22_RS01400 (T190130A14A_0287) panC 301241..302092 (+) 852 WP_348715698.1 pantoate--beta-alanine ligase -
  ABNT22_RS01405 (T190130A14A_0288) panD 302155..302505 (+) 351 WP_348715700.1 aspartate 1-decarboxylase -
  ABNT22_RS01410 (T190130A14A_0289) - 302508..303452 (+) 945 WP_348715701.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ABNT22_RS01415 (T190130A14A_0290) - 303967..304383 (+) 417 WP_348715703.1 SMI1/KNR4 family protein -
  ABNT22_RS01420 (T190130A14A_0291) - 304527..304919 (+) 393 WP_348715705.1 hypothetical protein -
  ABNT22_RS01425 (T190130A14A_0292) - 305013..305399 (+) 387 WP_348715707.1 hypothetical protein -
  ABNT22_RS01430 (T190130A14A_0294) radA 305532..306893 (+) 1362 WP_348715709.1 DNA repair protein RadA Machinery gene
  ABNT22_RS01435 (T190130A14A_0295) - 306911..310327 (-) 3417 WP_348715711.1 T9SS type B sorting domain-containing protein -
  ABNT22_RS01440 (T190130A14A_0296) - 310374..311180 (-) 807 WP_348715713.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49821.25 Da        Isoelectric Point: 7.3673

>NTDB_id=1164526 ABNT22_RS01430 WP_348715709.1 305532..306893(+) (radA) [Tenacibaculum polynesiense isolate ena-SAMPLE-TAB-13-05-2024-13:56:06:370-140306]
MPKTKTTFFCQNCGTQHAQWVGQCNNCKQWNTVVEEVIQKEEKRNWKSSSNTQKKVAKPLRVEEIQLNPEERFGTKNQEL
DTVLGGGLVKGAVILLGGEPGIGKSTLLLQIALQIPQKVLYVSGEESQSQIKMRAERLNASNSNCLILTETNTQQIFKNI
EEVQPDVLVIDSIQTLHTNSIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGNIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTAELGIYEMLSDGLREVSNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGTP
QRTTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNITGGIQVDDPAIDLAVVAAILSSNQDVAINPDVCFAAEVGLAGEI
RPVSKIDQRILEAEKLGYKTFVTSKYNKITSKNHSIRLVLVSKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1164526 ABNT22_RS01430 WP_348715709.1 305532..306893(+) (radA) [Tenacibaculum polynesiense isolate ena-SAMPLE-TAB-13-05-2024-13:56:06:370-140306]
ATGCCAAAAACCAAAACAACTTTTTTCTGTCAAAACTGTGGTACACAACATGCTCAATGGGTAGGACAATGTAATAATTG
TAAACAATGGAATACCGTTGTGGAAGAGGTGATACAAAAAGAAGAAAAAAGGAACTGGAAATCTTCCTCTAATACACAAA
AGAAAGTAGCAAAACCGTTACGAGTAGAAGAAATTCAATTAAATCCAGAAGAACGTTTTGGTACCAAAAACCAAGAGTTA
GATACTGTTTTAGGAGGTGGTTTGGTGAAAGGTGCGGTAATTTTGTTAGGAGGTGAGCCGGGAATCGGAAAATCTACCTT
GTTGTTACAAATAGCATTACAAATACCGCAAAAAGTATTGTATGTTTCTGGAGAAGAAAGCCAATCACAAATTAAAATGC
GAGCTGAGCGATTGAATGCAAGTAATTCCAATTGTTTAATTCTTACAGAAACCAATACTCAGCAAATTTTTAAGAATATA
GAAGAAGTTCAGCCAGATGTGCTAGTTATTGACTCTATTCAAACCCTACATACAAATTCTATTGAAGCTTCTCCTGGGAG
TATTTCTCAAATAAGAGAAACTTCTGCTGAGTTGATAAAATTTGCAAAAGAAACGGCTACTCCTGTATTATTGATTGGAC
ATATCAATAAAGAAGGAAATATTGCGGGGCCAAAGATTTTGGAGCATATGGTTGATGTGGTATTGCAGTTTGAAGGAGAT
AGAAATCATACCTATCGAATTTTACGTTCTCAGAAAAACCGTTTTGGGTCTACTGCTGAATTAGGAATTTACGAAATGCT
TTCTGATGGTTTGAGAGAAGTGTCTAATCCATCAGAAATATTAATTTCTAAAAAAGATGCAGATTTAAGTGGTACTGCAA
TAGCTTCAACTTTAGAAGGGATTCGTCCATTAATGATAGAAATTCAGGCATTGGTGTCTACGGCAGTATATGGAACTCCG
CAACGTACTACCACAGGCTATAACTTAAAACGCTTGCATATGATTTTAGCTGTATTAGAAAAAAGAGCAGGTTTTAAATT
AGGAGCAAAAGATGTATTTTTAAATATTACAGGAGGGATTCAGGTAGATGATCCTGCTATAGATTTAGCAGTAGTAGCAG
CTATTTTATCATCAAATCAAGATGTAGCAATTAATCCAGATGTATGTTTTGCTGCAGAAGTCGGTTTAGCAGGAGAAATA
AGACCCGTTTCTAAAATAGACCAACGAATTTTGGAAGCTGAAAAGTTAGGTTACAAAACTTTTGTTACTTCTAAATACAA
TAAAATAACAAGCAAAAACCATTCTATCAGGCTAGTTTTAGTGAGTAAAATAGAGGAGGCTTTTGCCACGTTGTTTGCTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.14

100

0.486
  radA Streptococcus mitis SK321

48.14

100

0.486
  radA Streptococcus mitis NCTC 12261

48.14

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.14

100

0.486
  radA Streptococcus pneumoniae D39

48.14

100

0.486
  radA Streptococcus pneumoniae R6

48.14

100

0.486
  radA Bacillus subtilis subsp. subtilis str. 168

47.577

100

0.477

Multiple sequence alignment