Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU53_RS15520 Genome accession   NZ_OZ040091
Coordinates   3115893..3116522 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30602_6#35     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3110893..3121522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU53_RS15505 helD 3111135..3113189 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU53_RS15510 yccF 3113312..3113758 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU53_RS15515 yccS 3113768..3115930 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU53_RS15520 sxy/tfoX 3115893..3116522 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU53_RS15525 sulA 3116741..3117250 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU53_RS15530 ompA 3117606..3118658 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU53_RS15535 matP 3118734..3119186 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU53_RS15540 ycbZ 3119372..3121132 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164515 ABGU53_RS15520 WP_000839151.1 3115893..3116522(-) (sxy/tfoX) [Escherichia coli isolate 30602_6#35]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164515 ABGU53_RS15520 WP_000839151.1 3115893..3116522(-) (sxy/tfoX) [Escherichia coli isolate 30602_6#35]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment