Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU64_RS15445 Genome accession   NZ_OZ040035
Coordinates   3121985..3122614 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30821_1#280     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3116985..3127614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU64_RS15430 helD 3117227..3119281 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU64_RS15435 yccF 3119404..3119850 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU64_RS15440 yccS 3119860..3122022 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU64_RS15445 sxy/tfoX 3121985..3122614 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU64_RS15450 sulA 3122833..3123342 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU64_RS15455 ompA 3123698..3124750 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU64_RS15460 matP 3124826..3125278 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU64_RS15465 ycbZ 3125464..3127224 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164492 ABGU64_RS15445 WP_000839151.1 3121985..3122614(-) (sxy/tfoX) [Escherichia coli isolate 30821_1#280]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164492 ABGU64_RS15445 WP_000839151.1 3121985..3122614(-) (sxy/tfoX) [Escherichia coli isolate 30821_1#280]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment