Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU54_RS15505 Genome accession   NZ_OZ039818
Coordinates   3135011..3135640 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30345_1#186     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3130011..3140640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU54_RS15490 helD 3130253..3132307 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU54_RS15495 yccF 3132430..3132876 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU54_RS15500 yccS 3132886..3135048 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU54_RS15505 sxy/tfoX 3135011..3135640 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU54_RS15510 sulA 3135859..3136368 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU54_RS15515 ompA 3136724..3137776 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU54_RS15520 matP 3137852..3138304 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU54_RS15525 ycbZ 3138490..3140250 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164377 ABGU54_RS15505 WP_000839151.1 3135011..3135640(-) (sxy/tfoX) [Escherichia coli isolate 30345_1#186]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164377 ABGU54_RS15505 WP_000839151.1 3135011..3135640(-) (sxy/tfoX) [Escherichia coli isolate 30345_1#186]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment