Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU83_RS14860 Genome accession   NZ_OZ039653
Coordinates   3016509..3017138 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30224_1#355     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3011509..3022138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU83_RS14845 helD 3011751..3013805 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU83_RS14850 yccF 3013928..3014374 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU83_RS14855 yccS 3014384..3016546 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU83_RS14860 sxy/tfoX 3016509..3017138 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU83_RS14865 sulA 3017357..3017866 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU83_RS14870 ompA 3018222..3019274 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU83_RS14875 matP 3019350..3019802 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU83_RS14880 ycbZ 3019988..3021748 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164354 ABGU83_RS14860 WP_000839151.1 3016509..3017138(-) (sxy/tfoX) [Escherichia coli isolate 30224_1#355]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164354 ABGU83_RS14860 WP_000839151.1 3016509..3017138(-) (sxy/tfoX) [Escherichia coli isolate 30224_1#355]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment