Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU81_RS15380 Genome accession   NZ_OZ039398
Coordinates   3098762..3099391 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30348_2#256     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3093762..3104391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU81_RS15365 helD 3094004..3096058 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU81_RS15370 yccF 3096181..3096627 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU81_RS15375 yccS 3096637..3098799 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU81_RS15380 sxy/tfoX 3098762..3099391 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU81_RS15385 sulA 3099610..3100119 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU81_RS15390 ompA 3100475..3101527 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU81_RS15395 matP 3101603..3102055 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU81_RS15400 ycbZ 3102241..3104001 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164308 ABGU81_RS15380 WP_000839151.1 3098762..3099391(-) (sxy/tfoX) [Escherichia coli isolate 30348_2#256]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164308 ABGU81_RS15380 WP_000839151.1 3098762..3099391(-) (sxy/tfoX) [Escherichia coli isolate 30348_2#256]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment