Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU51_RS09205 Genome accession   NZ_OZ039171
Coordinates   1857609..1858223 (+) Length   204 a.a.
NCBI ID   WP_346673904.1    Uniprot ID   -
Organism   Escherichia coli isolate 30348_1#89     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1852609..1863223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU51_RS09185 ycbZ 1852999..1854759 (-) 1761 WP_000156502.1 Lon protease family protein -
  ABGU51_RS09190 matP 1854945..1855397 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU51_RS09195 ompA 1855473..1856525 (-) 1053 WP_001346420.1 porin OmpA -
  ABGU51_RS09200 sulA 1856881..1857390 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU51_RS09205 sxy/tfoX 1857609..1858223 (+) 615 WP_346673904.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU51_RS09210 yccS 1858186..1860348 (-) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU51_RS09215 yccF 1860358..1860804 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU51_RS09220 helD 1860927..1862981 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23567.33 Da        Isoelectric Point: 8.5696

>NTDB_id=1164276 ABGU51_RS09205 WP_346673904.1 1857609..1858223(+) (sxy/tfoX) [Escherichia coli isolate 30348_1#89]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDILGAKMCWLRLRQQNCLVTE
KILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1164276 ABGU51_RS09205 WP_346673904.1 1857609..1858223(+) (sxy/tfoX) [Escherichia coli isolate 30348_1#89]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAACTGTCTGGTGACAGAA
AAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACGCCGCCAGGAGCTTGC
AGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

97.129

100

0.995

Multiple sequence alignment