Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU69_RS15440 Genome accession   NZ_OZ038806
Coordinates   3117050..3117679 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30345_1#335     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3112050..3122679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU69_RS15425 helD 3112292..3114346 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU69_RS15430 yccF 3114469..3114915 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU69_RS15435 yccS 3114925..3117087 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU69_RS15440 sxy/tfoX 3117050..3117679 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU69_RS15445 sulA 3117898..3118407 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU69_RS15450 ompA 3118763..3119815 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU69_RS15455 matP 3119891..3120343 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU69_RS15460 ycbZ 3120529..3122289 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164216 ABGU69_RS15440 WP_000839151.1 3117050..3117679(-) (sxy/tfoX) [Escherichia coli isolate 30345_1#335]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164216 ABGU69_RS15440 WP_000839151.1 3117050..3117679(-) (sxy/tfoX) [Escherichia coli isolate 30345_1#335]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment