Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU70_RS15240 Genome accession   NZ_OZ038769
Coordinates   3109759..3110388 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30348_2#44     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3104759..3115388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU70_RS15225 helD 3105001..3107055 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU70_RS15230 yccF 3107178..3107624 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU70_RS15235 yccS 3107634..3109796 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU70_RS15240 sxy/tfoX 3109759..3110388 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU70_RS15245 sulA 3110607..3111116 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU70_RS15250 ompA 3111472..3112524 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU70_RS15255 matP 3112600..3113052 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU70_RS15260 ycbZ 3113238..3114998 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164170 ABGU70_RS15240 WP_000839151.1 3109759..3110388(-) (sxy/tfoX) [Escherichia coli isolate 30348_2#44]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164170 ABGU70_RS15240 WP_000839151.1 3109759..3110388(-) (sxy/tfoX) [Escherichia coli isolate 30348_2#44]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment