Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABGU87_RS14360 Genome accession   NZ_OZ038590
Coordinates   2936181..2936810 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli isolate 30345_1#279     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2931181..2941810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU87_RS14345 helD 2931423..2933477 (-) 2055 WP_001295938.1 DNA helicase IV -
  ABGU87_RS14350 yccF 2933600..2934046 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABGU87_RS14355 yccS 2934056..2936218 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABGU87_RS14360 sxy/tfoX 2936181..2936810 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABGU87_RS14365 sulA 2937029..2937538 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ABGU87_RS14370 ompA 2937894..2938946 (+) 1053 WP_001346420.1 porin OmpA -
  ABGU87_RS14375 matP 2939021..2939473 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ABGU87_RS14380 ycbZ 2939659..2941419 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1164147 ABGU87_RS14360 WP_000839151.1 2936181..2936810(-) (sxy/tfoX) [Escherichia coli isolate 30345_1#279]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1164147 ABGU87_RS14360 WP_000839151.1 2936181..2936810(-) (sxy/tfoX) [Escherichia coli isolate 30345_1#279]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment