Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABNT65_RS15690 Genome accession   NZ_OZ038525
Coordinates   3935167..3936528 (+) Length   453 a.a.
NCBI ID   WP_348746262.1    Uniprot ID   -
Organism   Tenacibaculum vairaonense isolate ena-SAMPLE-TAB-13-05-2024-13:56:06:370-140303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3930167..3941528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNT65_RS15685 (T190524A02B_3204) - 3934672..3935034 (-) 363 WP_348705142.1 nuclear transport factor 2 family protein -
  ABNT65_RS15690 (T190524A02B_3205) radA 3935167..3936528 (+) 1362 WP_348746262.1 DNA repair protein RadA Machinery gene
  ABNT65_RS15695 (T190524A02B_3206) - 3936797..3938572 (-) 1776 WP_348746263.1 chloride channel protein -
  ABNT65_RS15700 (T190524A02B_3208) - 3938742..3939245 (+) 504 WP_348746264.1 hypothetical protein -
  ABNT65_RS15705 (T190524A02B_3209) - 3939310..3939978 (+) 669 WP_348746265.1 hypothetical protein -
  ABNT65_RS15710 (T190524A02B_3210) - 3939978..3940985 (+) 1008 WP_348705151.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49929.65 Da        Isoelectric Point: 8.4607

>NTDB_id=1164105 ABNT65_RS15690 WP_348746262.1 3935167..3936528(+) (radA) [Tenacibaculum vairaonense isolate ena-SAMPLE-TAB-13-05-2024-13:56:06:370-140303]
MAKTKTTFFCQNCGTQHAQWVGQCNVCKQWNTIVEEVIQKEEKRSWKTPSNKEKRVSKPLRVKEIQLNPEERFGTKNQEL
DTVLGGGLVKGAVVLLGGEPGIGKSTLLLQIALQISQKVLYVSGEESQSQIKMRAERLVSKNSNCLILTETNTQQIFKNI
EEVQPDVLVIDSIQTLHTNIIEASPGSISQIRETSAELIKFAKETSTPVLLIGHINKEGHIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTAELGIYEMLSDGLREVSNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGTP
QRTTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNVTGGIRVDDPAIDLAVVAAILSSNQDLAINPDVCFAAEVGLAGEI
RPVSKIDQRILEAEKLGYKTFVASKYNKITSKNHSIKLILVSKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1164105 ABNT65_RS15690 WP_348746262.1 3935167..3936528(+) (radA) [Tenacibaculum vairaonense isolate ena-SAMPLE-TAB-13-05-2024-13:56:06:370-140303]
ATGGCAAAAACTAAAACTACTTTTTTCTGTCAAAATTGCGGTACGCAACATGCACAATGGGTTGGACAATGTAATGTATG
TAAACAATGGAATACTATTGTTGAAGAAGTGATTCAAAAAGAAGAGAAAAGAAGTTGGAAAACACCATCAAACAAAGAAA
AAAGAGTTTCTAAGCCTTTACGTGTTAAAGAAATTCAATTAAATCCCGAAGAACGTTTTGGTACTAAAAATCAGGAGTTA
GACACCGTTTTAGGTGGTGGATTAGTTAAAGGTGCTGTTGTTTTACTAGGAGGAGAACCTGGTATTGGTAAGTCTACTTT
ACTTTTACAGATTGCTCTACAAATTTCTCAAAAAGTATTGTATGTTTCTGGAGAAGAAAGTCAATCGCAAATAAAAATGC
GAGCAGAACGATTGGTTTCTAAAAACTCTAATTGTTTAATTCTTACAGAAACCAACACACAGCAAATATTTAAAAATATT
GAAGAAGTACAGCCTGATGTTTTAGTTATTGATTCTATTCAAACATTACACACCAATATTATTGAAGCTTCTCCTGGAAG
TATTTCACAAATACGAGAAACCTCCGCAGAACTCATCAAATTTGCCAAGGAAACTTCAACTCCTGTTTTATTAATTGGAC
ATATTAATAAAGAAGGGCATATTGCTGGTCCTAAAATTTTAGAACACATGGTAGATGTAGTTCTACAATTTGAAGGAGAC
AGGAACCATACTTATCGAATTTTACGTTCGCAAAAAAATCGTTTTGGTTCTACTGCTGAACTAGGGATTTATGAAATGCT
TTCTGATGGATTAAGGGAAGTATCCAATCCTTCTGAAATTTTAATTTCTAAAAAAGACGCAGATTTAAGCGGAACGGCTA
TTGCTTCTACTTTAGAAGGAATCCGCCCCTTAATGATTGAAATACAAGCTTTGGTTAGTACGGCTGTTTACGGAACACCA
CAAAGAACCACTACAGGTTACAATTTAAAACGCTTACACATGATTTTAGCGGTTCTTGAAAAAAGAGCAGGCTTTAAACT
GGGAGCAAAAGATGTGTTCCTAAATGTAACTGGTGGTATTCGAGTTGATGATCCGGCTATTGATTTAGCAGTTGTTGCAG
CTATTTTATCTTCTAATCAAGATTTAGCAATTAATCCAGACGTGTGCTTTGCTGCCGAAGTAGGTTTAGCTGGAGAAATA
AGACCAGTTTCTAAAATTGATCAAAGAATATTAGAAGCTGAAAAATTGGGTTACAAAACGTTTGTTGCTTCAAAATATAA
TAAAATCACCTCTAAAAACCACAGTATAAAGCTTATTTTAGTTAGTAAAATTGAAGAGGCTTTTGCTACGTTGTTTGCCT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(70-219)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.678

100

0.488
  radA Streptococcus mitis NCTC 12261

48.14

100

0.486
  radA Streptococcus mitis SK321

48.14

100

0.486
  radA Streptococcus pneumoniae Rx1

48.14

100

0.486
  radA Streptococcus pneumoniae D39

48.14

100

0.486
  radA Streptococcus pneumoniae R6

48.14

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.14

100

0.486

Multiple sequence alignment