Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABNT61_RS10680 Genome accession   NZ_OZ038523
Coordinates   2468668..2470029 (-) Length   453 a.a.
NCBI ID   WP_348743194.1    Uniprot ID   -
Organism   Tenacibaculum platacis isolate ena-SAMPLE-TAB-13-05-2024-13:56:06:370-140299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2463668..2475029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNT61_RS10665 (T190524A05C_2138) - 2463839..2465992 (+) 2154 WP_348743191.1 tetratricopeptide repeat protein -
  ABNT61_RS10670 (T190524A05C_2139) - 2466091..2467464 (+) 1374 WP_348743192.1 DUF1800 domain-containing protein -
  ABNT61_RS10675 (T190524A05C_2140) - 2467475..2468671 (+) 1197 WP_348743193.1 DUF1501 domain-containing protein -
  ABNT61_RS10680 (T190524A05C_2141) radA 2468668..2470029 (-) 1362 WP_348743194.1 DNA repair protein RadA Machinery gene
  ABNT61_RS10685 (T190524A05C_2142) - 2470066..2470743 (-) 678 WP_348743195.1 hypothetical protein -
  ABNT61_RS10690 (T190524A05C_2143) - 2470768..2471616 (-) 849 WP_348743196.1 hypothetical protein -
  ABNT61_RS10695 (T190524A05C_2144) - 2471687..2472634 (-) 948 WP_348743197.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ABNT61_RS10700 (T190524A05C_2145) panD 2472647..2472997 (-) 351 WP_132795224.1 aspartate 1-decarboxylase -
  ABNT61_RS10705 (T190524A05C_2146) panC 2473042..2473893 (-) 852 WP_348743198.1 pantoate--beta-alanine ligase -
  ABNT61_RS10710 (T190524A05C_2147) - 2473987..2474808 (+) 822 WP_348743199.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49932.34 Da        Isoelectric Point: 6.6128

>NTDB_id=1164086 ABNT61_RS10680 WP_348743194.1 2468668..2470029(-) (radA) [Tenacibaculum platacis isolate ena-SAMPLE-TAB-13-05-2024-13:56:06:370-140299]
MAKTKTTYFCQNCGAQHAKWVGQCPNCKEWNTVVEEVVQKEEKRNWKSPSNSQKIVSKPLKIQEIELNTEERIHTRNNEL
DTVLGGGLVKGSVVLLGGEPGIGKSTLLLQIALQITEKVLYVSGEESQSQIKMRAERLANQNSNCLVLTETNTQQIFRNV
EEVEPDVLVIDSIQTLYTNNIEASPGSISQIKETSAELIKFAKETNTPVLLIGHINKEGNIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTAELGIYEMLSDGLREVTNPSEILISKKDTDLSGTAIASTLEGVRPLMIEIQALVSTAVYGTP
QRSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNVTGGIYIDDPAIDLAVVAAILSSNQDIAINPDVCFAAEVGLAGEI
RPVPKIDQRIVEAEKLGYKTFVTSKYNKITSKNHSIKLILVGKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1164086 ABNT61_RS10680 WP_348743194.1 2468668..2470029(-) (radA) [Tenacibaculum platacis isolate ena-SAMPLE-TAB-13-05-2024-13:56:06:370-140299]
ATGGCTAAAACAAAAACAACGTATTTCTGTCAAAATTGTGGAGCACAACATGCTAAATGGGTTGGACAATGTCCGAATTG
TAAAGAATGGAATACAGTTGTTGAAGAAGTAGTTCAAAAAGAAGAAAAACGAAACTGGAAATCACCATCTAATTCTCAAA
AAATAGTGAGTAAACCGCTGAAGATTCAAGAAATTGAATTGAATACAGAGGAGAGAATTCATACTAGAAACAATGAACTT
GATACTGTTTTAGGAGGTGGATTGGTAAAAGGATCAGTTGTGTTATTAGGAGGTGAACCAGGAATTGGTAAGTCTACACT
GTTACTTCAGATTGCATTACAGATTACTGAGAAAGTATTATACGTTTCAGGTGAGGAGAGTCAATCTCAAATTAAAATGA
GAGCAGAACGTTTGGCAAATCAAAATTCAAATTGCTTAGTTCTTACAGAAACAAATACGCAACAAATTTTTAGAAATGTT
GAAGAGGTGGAACCAGATGTTTTGGTTATTGATTCCATTCAAACATTATATACAAACAATATTGAAGCTTCTCCTGGAAG
CATTTCCCAGATTAAAGAAACGTCCGCAGAACTTATAAAATTTGCCAAAGAAACCAATACACCAGTTTTATTAATTGGGC
ATATAAATAAGGAAGGAAACATTGCCGGGCCAAAAATCTTAGAACACATGGTGGATGTAGTTCTTCAATTTGAAGGAGAT
AGAAATCATACCTATCGAATATTAAGATCTCAAAAAAACAGATTTGGTTCAACGGCAGAATTAGGAATTTATGAAATGTT
ATCTGATGGTTTACGAGAAGTTACCAATCCATCTGAAATTCTAATTTCTAAAAAAGACACTGATCTAAGTGGAACTGCAA
TTGCGTCAACTTTAGAAGGAGTTCGTCCGTTAATGATAGAAATACAAGCGTTAGTAAGCACTGCGGTATACGGAACGCCA
CAACGTTCTACAACAGGTTATAATCTAAAGCGATTGCACATGATTTTAGCTGTTTTGGAAAAACGAGCAGGTTTTAAACT
AGGTGCTAAAGATGTATTTTTAAATGTAACTGGTGGAATTTATATTGACGATCCGGCTATTGATTTAGCAGTTGTAGCGG
CAATTTTATCTTCTAATCAGGATATTGCTATAAATCCTGATGTTTGTTTTGCGGCTGAAGTTGGTTTAGCAGGAGAAATT
CGTCCGGTTCCAAAGATTGATCAACGAATTGTAGAAGCTGAAAAACTGGGATATAAAACTTTTGTAACATCTAAATACAA
TAAAATTACCTCAAAAAATCATTCTATTAAGCTAATTTTAGTTGGTAAAATAGAAGAAGCTTTTGCAACTTTATTTGCTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(331-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.796

100

0.492
  radA Streptococcus mitis SK321

48.796

100

0.492
  radA Streptococcus mitis NCTC 12261

48.796

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.796

100

0.492
  radA Streptococcus pneumoniae D39

48.796

100

0.492
  radA Streptococcus pneumoniae R6

48.796

100

0.492
  radA Bacillus subtilis subsp. subtilis str. 168

48.899

100

0.49

Multiple sequence alignment