Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECRM12761_RS05020 Genome accession   NZ_CP007133
Coordinates   1052856..1053485 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O145:H28 str. RM12761     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1047856..1058485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECRM12761_RS04995 (ECRM12761_4860) ycbZ 1048243..1050003 (-) 1761 WP_025380286.1 Lon protease family protein -
  ECRM12761_RS05000 (ECRM12761_4865) matP 1050189..1050641 (+) 453 WP_025380287.1 macrodomain Ter protein MatP -
  ECRM12761_RS05005 (ECRM12761_4870) ompA 1050716..1051771 (-) 1056 WP_000750414.1 porin OmpA -
  ECRM12761_RS05015 (ECRM12761_4880) sulA 1052128..1052637 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECRM12761_RS05020 (ECRM12761_4885) sxy/tfoX 1052856..1053485 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECRM12761_RS05025 (ECRM12761_4890) yccS 1053448..1055610 (-) 2163 WP_000875041.1 YccS family putative transporter -
  ECRM12761_RS05030 (ECRM12761_4895) yccF 1055620..1056066 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ECRM12761_RS05035 (ECRM12761_4900) helD 1056189..1058243 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=116394 ECRM12761_RS05020 WP_000839153.1 1052856..1053485(+) (sxy/tfoX) [Escherichia coli O145:H28 str. RM12761]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=116394 ECRM12761_RS05020 WP_000839153.1 1052856..1053485(+) (sxy/tfoX) [Escherichia coli O145:H28 str. RM12761]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment