Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   RG41_RS26310 Genome accession   NZ_CP010151
Coordinates   5058825..5060063 (-) Length   412 a.a.
NCBI ID   WP_021528993.1    Uniprot ID   -
Organism   Escherichia coli strain D8     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 5053825..5065063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG41_RS26300 (RG41_24890) - 5056634..5057662 (+) 1029 WP_074434985.1 XcbB/CpsF family capsular polysaccharide biosynthesis protein -
  RG41_RS26305 (RG41_24895) - 5057668..5058663 (+) 996 WP_001208050.1 hypothetical protein -
  RG41_RS26310 (RG41_24900) kpsS 5058825..5060063 (-) 1239 WP_021528993.1 capsular biosynthesis protein Regulator
  RG41_RS26315 (RG41_24905) - 5060098..5062125 (-) 2028 WP_000579514.1 capsular polysaccharide biosynthesis protein -
  RG41_RS26320 (RG41_24910) kdsB 5062122..5062862 (-) 741 WP_000030744.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RG41_RS26325 (RG41_24915) - 5062872..5064548 (-) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 48846.47 Da        Isoelectric Point: 10.1113

>NTDB_id=116386 RG41_RS26310 WP_021528993.1 5058825..5060063(-) (kpsS) [Escherichia coli strain D8]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGLRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGGVKFENALGM
NKDLLFGSKSIS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=116386 RG41_RS26310 WP_021528993.1 5058825..5060063(-) (kpsS) [Escherichia coli strain D8]
ATGCAAGGTAATGCACTAACCATTTTATTGTCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATATCTGGCTTACTACCAAACGCCGAAAGAGTTTCCTGGTTGGTTGCGAGATCTCCACCGACAATATGAC
TTTGACACCATCCTCTGTTTTGGTGACTGTCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGCTCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGTAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATATACGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCTAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTATGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTTAAGACACAGGTTAATGCGGTTTATTATGGGGGAGTAAAATTTGAGAATGCATTGGGTATG
AATAAGGATCTTTTGTTTGGATCAAAGTCAATATCATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.589

94.417

0.374