Detailed information NTG0116355

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RG41_RS20645
• Genome accession: NZ_CP010151
• Coordinates: 3974931..3975956 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644911.1
• Uniprot ID: -
• Organism: Escherichia coli strain D8
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3969931..3980956

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RG41_RS20625 (RG41_19425)	metJ	3971116..3971433 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
RG41_RS20630 (RG41_19430)	yiiX	3971493..3972101 (+)	609	WP_000702302.1	YiiX family permuted papain-like enzyme	-
RG41_RS20635 (RG41_19435)	rpmE	3972162..3972374 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
RG41_RS20640 (RG41_19440)	priA	3972577..3974775 (+)	2199	WP_001468126.1	primosomal protein N'	Machinery gene
RG41_RS20645 (RG41_19445)	cytR	3974931..3975956 (+)	1026	WP_000644911.1	DNA-binding transcriptional regulator CytR	Regulator
RG41_RS20650 (RG41_19450)	ftsN	3976048..3977007 (+)	960	WP_000068834.1	cell division protein FtsN	-
RG41_RS20655 (RG41_19455)	hslV	3977100..3977630 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
RG41_RS20660 (RG41_19460)	hslU	3977640..3978971 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
RG41_RS20665 (RG41_19465)	menA	3979038..3979964 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
RG41_RS20670 (RG41_19470)	rraA	3980057..3980542 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
RG41_RS20675 (RG41_19475)	zapB	3980627..3980872 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37805.71 Da
• Isoelectric Point: 6.1617

>NTDB_id=116355 RG41_RS20645 WP_000644911.1 3974931..3975956(+) (cytR) [Escherichia coli strain D8]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHNRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=116355 RG41_RS20645 WP_000644911.1 3974931..3975956(+) (cytR) [Escherichia coli strain D8]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGACGCAACGTCAAGCGTAATGAATCCCGTACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATCGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAATCGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTCCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGTGATGTGATGGCGCTCGGCGCACTTTCGCAGGCAAAACGCCA
GGGGCTAAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625