Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | RG41_RS16010 | Genome accession | NZ_CP010151 |
| Coordinates | 3087575..3088015 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360913.1 | Uniprot ID | - |
| Organism | Escherichia coli strain D8 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3082575..3093015
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG41_RS15985 (RG41_15115) | aroP | 3083575..3084945 (+) | 1371 | WP_000399017.1 | aromatic amino acid transporter AroP | - |
| RG41_RS15990 (RG41_15120) | ampE | 3084988..3085842 (-) | 855 | WP_000171984.1 | beta-lactamase regulator AmpE | - |
| RG41_RS15995 (RG41_15125) | ampD | 3085839..3086390 (-) | 552 | WP_000923726.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| RG41_RS16000 (RG41_15130) | nadC | 3086478..3087371 (+) | 894 | WP_001135168.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| RG41_RS16010 (RG41_15140) | pilA | 3087575..3088015 (+) | 441 | WP_000360913.1 | prepilin peptidase-dependent pilin | Machinery gene |
| RG41_RS16015 (RG41_15145) | pilB | 3088025..3089410 (+) | 1386 | WP_001535814.1 | type II secretion system protein GspE | Machinery gene |
| RG41_RS16020 (RG41_15150) | hofC | 3089400..3090602 (+) | 1203 | WP_000157243.1 | protein transport protein HofC | - |
| RG41_RS16025 (RG41_15155) | guaC | 3090637..3091680 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| RG41_RS28030 | - | 3091836..3091880 (-) | 45 | WP_120795372.1 | protein YacM | - |
| RG41_RS16030 (RG41_15160) | coaE | 3091905..3092525 (+) | 621 | WP_001269524.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15634.80 Da Isoelectric Point: 4.5237
>NTDB_id=116339 RG41_RS16010 WP_000360913.1 3087575..3088015(+) (pilA) [Escherichia coli strain D8]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSIVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSIVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=116339 RG41_RS16010 WP_000360913.1 3087575..3088015(+) (pilA) [Escherichia coli strain D8]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCATCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCATCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |