Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG41_RS01630 Genome accession   NZ_CP010151
Coordinates   327735..328250 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain D8     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 322735..333250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG41_RS01590 (RG41_01500) csrA 323730..323915 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  RG41_RS01615 (RG41_01530) yqaB 324965..325531 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG41_RS01620 (RG41_01535) yqaA 325528..325956 (+) 429 WP_001287462.1 YqaA family protein -
  RG41_RS01625 (RG41_01540) gshA 326029..327585 (+) 1557 WP_000611781.1 glutamate--cysteine ligase -
  RG41_RS01630 (RG41_01545) luxS 327735..328250 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  RG41_RS01635 (RG41_01550) - 328301..329413 (-) 1113 WP_000638151.1 ATP-binding protein -
  RG41_RS01640 (RG41_01555) - 329410..330117 (-) 708 WP_001097127.1 RNA ligase family protein -
  RG41_RS01645 (RG41_01560) emrB 330375..331913 (-) 1539 WP_001467845.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG41_RS01650 (RG41_01565) emrA 331930..333102 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=116305 RG41_RS01630 WP_001130208.1 327735..328250(+) (luxS) [Escherichia coli strain D8]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=116305 RG41_RS01630 WP_001130208.1 327735..328250(+) (luxS) [Escherichia coli strain D8]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment