Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABNR97_RS05115 Genome accession   NZ_OZ021676
Coordinates   979021..979620 (+) Length   199 a.a.
NCBI ID   WP_047926976.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 974021..984620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR97_RS05100 yihA 974605..975234 (+) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ABNR97_RS05105 - 975355..977751 (-) 2397 WP_003690571.1 penicillin-binding protein 1A -
  ABNR97_RS05110 - 977903..979018 (+) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  ABNR97_RS05115 pilN 979021..979620 (+) 600 WP_047926976.1 PilN domain-containing protein Machinery gene
  ABNR97_RS05120 pilO 979621..980268 (+) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  ABNR97_RS05125 pilP 980286..980831 (+) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  ABNR97_RS05130 pilQ 980850..983045 (+) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22283.64 Da        Isoelectric Point: 9.7317

>NTDB_id=1162916 ABNR97_RS05115 WP_047926976.1 979021..979620(+) (pilN) [Neisseria gonorrhoeae isolate SGC-23-001]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGVVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1162916 ABNR97_RS05115 WP_047926976.1 979021..979620(+) (pilN) [Neisseria gonorrhoeae isolate SGC-23-001]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGTCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975

Multiple sequence alignment