Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   STAB902_RS10325 Genome accession   NZ_CP007041
Coordinates   48475..48573 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes STAB902     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 43475..53573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB902_RS00250 (STAB902_00260) - 44341..45681 (+) 1341 WP_002986685.1 hypothetical protein -
  STAB902_RS00255 (STAB902_00265) purB 46050..47342 (+) 1293 WP_011054098.1 adenylosuccinate lyase -
  STAB902_RS00260 (STAB902_00270) comR 47473..48384 (+) 912 WP_011054099.1 helix-turn-helix domain-containing protein Regulator
  STAB902_RS10325 comS 48475..48573 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  STAB902_RS00265 (STAB902_00280) ruvB 48604..49602 (+) 999 WP_011054100.1 Holliday junction branch migration DNA helicase RuvB -
  STAB902_RS00270 (STAB902_00285) - 49740..50177 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  STAB902_RS00275 (STAB902_00290) - 50200..50601 (+) 402 WP_011017240.1 MORN repeat-containing protein -
  STAB902_RS00280 (STAB902_00295) - 50598..52373 (+) 1776 WP_011054101.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=116291 STAB902_RS10325 WP_020833188.1 48475..48573(+) (comS) [Streptococcus pyogenes STAB902]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=116291 STAB902_RS10325 WP_020833188.1 48475..48573(+) (comS) [Streptococcus pyogenes STAB902]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment