Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   ABNR90_RS10440 Genome accession   NZ_OZ021673
Coordinates   1978424..1979464 (-) Length   346 a.a.
NCBI ID   WP_149032521.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-002     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 1973424..1984464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR90_RS10420 - 1974920..1975546 (-) 627 WP_003698099.1 phosphoribosylanthranilate isomerase -
  ABNR90_RS10425 greB 1975605..1976096 (-) 492 WP_003687613.1 transcription elongation factor GreB -
  ABNR90_RS10430 purF 1976196..1977740 (-) 1545 WP_003687614.1 amidophosphoribosyltransferase -
  ABNR90_RS10435 - 1977934..1978431 (-) 498 WP_003687616.1 CvpA family protein -
  ABNR90_RS10440 tpc 1978424..1979464 (-) 1041 WP_149032521.1 cell division protein FtsN Machinery gene
  ABNR90_RS10445 folC 1979478..1980752 (-) 1275 WP_003687619.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  ABNR90_RS10450 - 1980783..1981223 (-) 441 WP_003687622.1 protein YgfX -
  ABNR90_RS10455 - 1981228..1981587 (-) 360 WP_003687624.1 hypothetical protein -
  ABNR90_RS10460 - 1981660..1982388 (-) 729 WP_010357138.1 amino acid ABC transporter ATP-binding protein -
  ABNR90_RS10465 - 1982430..1982885 (-) 456 WP_003690747.1 hypothetical protein -
  ABNR90_RS10470 - 1982997..1983566 (-) 570 WP_003687630.1 GTP pyrophosphokinase -
  ABNR90_RS10475 rsmA 1983581..1984360 (-) 780 WP_003687633.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 37038.24 Da        Isoelectric Point: 9.8118

>NTDB_id=1162888 ABNR90_RS10440 WP_149032521.1 1978424..1979464(-) (tpc) [Neisseria gonorrhoeae isolate SGC-23-002]
MSENKQNEVLTGYEQLKRRNRRRLVTASSLVAASCILLAAALSSDPADSNPAPQAGETGATESQTANTAQTPALKSAAEN
GETAADKPQDLAGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEESEKLQQAETAKTEPKQAKQRAAEKMSATA
DSTDTVAVEKPKRTAEPKPQKAERTAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAEGKKTAEK
DRSDGKKHETAQKTDKADKTKTAEKEKSGKAGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSN
YKNARDAERDLNKLRVHGIAGQVTNE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1162888 ABNR90_RS10440 WP_149032521.1 1978424..1979464(-) (tpc) [Neisseria gonorrhoeae isolate SGC-23-002]
ATGTCCGAAAACAAACAAAACGAAGTCCTGACCGGTTACGAACAGCTGAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGCTCCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCACTCAGTTCCGATCCTGCCGACAGCAATCCCGCACCGC
AGGCCGGCGAAACCGGCGCAACGGAAAGCCAAACGGCAAACACGGCACAAACCCCTGCCTTGAAATCCGCCGCCGAAAAC
GGGGAAACCGCCGCCGACAAACCGCAGGACTTGGCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCC
TGAAAACGTAGGCGCGCCGCTGGTGCTGATTAACGACCGGCTCGAAGACAGCAACATCAAAGGTTTGGAAGAATCCGAGA
AACTGCAACAGGCAGAAACCGCCAAAACCGAACCGAAGCAGGCAAAACAACGCGCTGCCGAAAAAATGTCGGCAACTGCC
GACAGTACGGATACGGTAGCGGTTGAAAAACCGAAACGCACTGCCGAACCCAAACCGCAAAAAGCGGAACGCACTGCCGA
AGCCAAGCCCAAAGCCAAAGAAACCAAAACCGCCGAAAAAGTTGCCGACAAACCGAAAACTGCTGCCGAAAAAACCAAAC
CGGATACGGCAAAATCCGACAGCGCGGTAAAAGAAGCGAAAAAAGCCGACAAGGCTGAAGGCAAAAAGACAGCCGAAAAA
GACCGTTCGGACGGCAAAAAACACGAAACGGCGCAAAAAACCGACAAAGCGGACAAAACCAAAACCGCCGAGAAGGAAAA
ATCCGGCAAGGCGGGCAAAAAAGCCGCCATTCAGGCAGGTTATGCCGAAAAAGAACGCGCCTTGAGCCTCCAGCGCAAAA
TGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATCATGACCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAAC
TATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAACTGCGCGTGCACGGCATCGCCGGCCAGGTAACGAATGAATA
G

Domains


Predicted by InterproScan.

(272-344)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

99.422

100

0.994


Multiple sequence alignment