Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABNR90_RS09250 Genome accession   NZ_OZ021673
Coordinates   1748319..1748918 (-) Length   199 a.a.
NCBI ID   WP_003687354.1    Uniprot ID   A0AA44U8R8
Organism   Neisseria gonorrhoeae isolate SGC-23-002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1743319..1753918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR90_RS09235 pilQ 1744894..1747089 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  ABNR90_RS09240 pilP 1747108..1747653 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  ABNR90_RS09245 pilO 1747671..1748318 (-) 648 WP_047922703.1 type 4a pilus biogenesis protein PilO -
  ABNR90_RS09250 pilN 1748319..1748918 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  ABNR90_RS09255 - 1748921..1750036 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  ABNR90_RS09260 - 1750188..1752584 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  ABNR90_RS09265 yihA 1752705..1753334 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22183.53 Da        Isoelectric Point: 9.8898

>NTDB_id=1162885 ABNR90_RS09250 WP_003687354.1 1748319..1748918(-) (pilN) [Neisseria gonorrhoeae isolate SGC-23-002]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1162885 ABNR90_RS09250 WP_003687354.1 1748319..1748918(-) (pilN) [Neisseria gonorrhoeae isolate SGC-23-002]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975

Multiple sequence alignment