Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABGT73_RS01710 Genome accession   NZ_OZ007030
Coordinates   352448..354259 (+) Length   603 a.a.
NCBI ID   WP_346668126.1    Uniprot ID   -
Organism   MAG: uncultured Subdoligranulum sp. isolate 6755_HET_CTRL_s308.ctg000382l_hifiasm_large MAG     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 347448..359259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT73_RS01690 - 348430..348828 (-) 399 WP_346668122.1 hypothetical protein -
  ABGT73_RS01695 - 348844..349275 (-) 432 WP_346668123.1 Lrp/AsnC family transcriptional regulator -
  ABGT73_RS01700 - 349725..350243 (+) 519 WP_346668124.1 MarR family transcriptional regulator -
  ABGT73_RS01705 - 350227..352446 (+) 2220 WP_346668125.1 ABC transporter ATP-binding protein -
  ABGT73_RS01710 rcrQ 352448..354259 (+) 1812 WP_346668126.1 ABC transporter ATP-binding protein Regulator
  ABGT73_RS01715 rny 354585..356138 (+) 1554 WP_346668127.1 ribonuclease Y -
  ABGT73_RS01720 - 356254..356976 (+) 723 WP_346668128.1 amino acid racemase -
  ABGT73_RS01725 metG 357008..359014 (+) 2007 WP_346668129.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66522.66 Da        Isoelectric Point: 5.9733

>NTDB_id=1162763 ABGT73_RS01710 WP_346668126.1 352448..354259(+) (rcrQ) [MAG: uncultured Subdoligranulum sp. isolate 6755_HET_CTRL_s308.ctg000382l_hifiasm_large MAG]
MPRPGRMTTERARDFQGTLRQLLKALGRYKISLGVVVVFAVLSTIFNIAGPKVLAQATTALATGWVAKLRGTGSIDFVFI
GRILLILLGMYLLSSAFSFVQSWLMSGLSQKVCYDFRRQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLIMMLSISARMTLIALLILPVSLALVMVVVHFSQRFFKAQQATLGVVNGQVEEVYAGHNVIKAFNREQ
AVLDDFNTANDQLYASAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAAGGLITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMAAAAERVFEFLAEEEEDQTADPARRADPATIDGQVTFDHVKFGYTPEKTVIRDFSCKVQPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDVRDFDRSALREGFGMVLQDTWLFQGTIMENIRYGRLDATDEEVIAAAKAAGADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARTILADNRILVLDEATSSVDTRTEQRIQAAMDRLMQGRTSFIIAHRLSTI
RNADLILVMRDGDIVEQGTHDELMEAGGFYADLYNSQFEDVTA

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1162763 ABGT73_RS01710 WP_346668126.1 352448..354259(+) (rcrQ) [MAG: uncultured Subdoligranulum sp. isolate 6755_HET_CTRL_s308.ctg000382l_hifiasm_large MAG]
ATGCCAAGACCCGGACGGATGACCACCGAACGCGCCAGGGACTTCCAGGGCACGCTGCGCCAGCTGCTGAAAGCCCTGGG
ACGTTACAAGATTTCCCTGGGCGTGGTGGTTGTGTTTGCGGTGCTCTCCACCATCTTCAACATCGCCGGCCCCAAGGTTC
TGGCCCAGGCCACCACCGCCCTGGCCACCGGCTGGGTGGCCAAACTGCGGGGCACCGGCTCCATCGACTTTGTCTTCATC
GGCCGCATTCTGCTCATTCTTTTGGGCATGTACCTGCTCTCCTCGGCCTTCAGCTTTGTGCAGAGCTGGCTCATGAGCGG
CCTTTCCCAGAAAGTCTGCTACGATTTCCGCCGCCAGATCAGCGAAAAGATCAACCGCCTGCCCCTGGCCTACTTTGAAA
AGCGCACGGTGGGCGAGGTGCTCTCCCGCATCACCAACGACGTGGACACCCTGGGCCAGAGCCTGAACCAGAGCATCACC
CAGCTGATCACCAGCGTCACCACCATGATCGGTGTGCTCATCATGATGCTCTCCATCAGCGCCCGGATGACCCTCATCGC
CCTGCTGATCCTGCCGGTGTCGCTGGCGCTGGTCATGGTGGTGGTCCACTTCAGCCAGCGGTTCTTCAAGGCCCAGCAGG
CCACCCTGGGCGTGGTCAACGGCCAGGTGGAGGAGGTCTACGCCGGCCACAACGTCATCAAGGCGTTCAACCGGGAGCAG
GCGGTGCTCGACGATTTCAACACCGCCAACGACCAGCTCTACGCCTCCGCCTGGAAGAGCCAGTTCCTCTCCGGCCTGAT
GATGCCCATCATGAACTTTGTGGGCAACCTGGGCTATGTGGCGGTGGCCATCGTGGGCAGCATCTTTGCGGCGGGAGGGC
TCATCACCATCGGCGATATCCAGGCCTTCATCCAGTACGTGAAGAACTTCACCCAGCCCATCCAGCAGCTGTCCCAGGTG
TCCAACATGCTCCAGAGCATGGCGGCCGCCGCCGAGCGCGTCTTTGAGTTCCTGGCCGAAGAGGAGGAGGACCAGACCGC
CGACCCGGCCCGCCGCGCCGACCCCGCCACCATCGACGGGCAGGTCACCTTCGACCATGTGAAGTTCGGCTACACCCCCG
AGAAGACGGTCATCCGCGACTTCAGCTGCAAGGTGCAGCCCGGCCAGAAGGTGGCCATCGTGGGCCCCACCGGCGCCGGC
AAGACCACCATGGTCAAGCTGCTCATGCGGTTCTACGATGTGGATTCCGGTTCCATCACGCTGAACGGCCACGATGTGCG
GGACTTTGACCGGTCCGCCCTGCGGGAGGGCTTCGGTATGGTGCTGCAGGACACCTGGCTGTTCCAGGGCACCATCATGG
AGAACATCCGCTACGGCCGTCTGGATGCCACCGACGAGGAGGTCATCGCCGCGGCGAAAGCGGCCGGTGCCGACCACTTC
ATCCGCACGCTGCCCGGCGGCTACCAGATGGAGCTGAACGAGGACGCCTCCAACGTGAGCCAGGGCCAGAAACAGCTGCT
CACCATCGCCCGGACCATCCTGGCGGACAACCGCATCCTGGTGCTGGACGAGGCCACCAGCAGCGTGGACACCCGCACCG
AGCAGCGCATCCAGGCGGCCATGGACCGCCTGATGCAGGGGCGCACCAGCTTCATCATCGCCCACCGGCTTTCCACCATC
CGCAATGCCGACCTGATCCTCGTCATGCGGGACGGCGACATTGTGGAACAGGGCACCCACGACGAGCTGATGGAGGCGGG
CGGCTTCTACGCCGACCTGTACAACAGCCAGTTTGAGGACGTGACAGCGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(379-527)

ABC transporter transmembrane region (ABC_membrane)

(34-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.111

97.015

0.496

Multiple sequence alignment