Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABGT36_RS06090 Genome accession   NZ_OZ007017
Coordinates   1182690..1184534 (+) Length   614 a.a.
NCBI ID   WP_346677215.1    Uniprot ID   -
Organism   MAG: Erysipelatoclostridium sp. An173 isolate 6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1177690..1189534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT36_RS06075 - 1178633..1179859 (+) 1227 WP_346677211.1 glutamate-5-semialdehyde dehydrogenase -
  ABGT36_RS06080 - 1180017..1180469 (+) 453 WP_087373160.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABGT36_RS06085 - 1180469..1182697 (+) 2229 WP_346677213.1 ABC transporter ATP-binding protein -
  ABGT36_RS06090 rcrQ 1182690..1184534 (+) 1845 WP_346677215.1 ABC transporter ATP-binding protein Regulator
  ABGT36_RS06095 - 1184599..1185936 (+) 1338 WP_346677217.1 replication-associated recombination protein A -
  ABGT36_RS06100 - 1186015..1186854 (+) 840 WP_346677219.1 undecaprenyl phosphate translocase family protein -
  ABGT36_RS06105 - 1186958..1188025 (+) 1068 WP_346677221.1 molybdopterin-binding protein -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68041.22 Da        Isoelectric Point: 6.2013

>NTDB_id=1162748 ABGT36_RS06090 WP_346677215.1 1182690..1184534(+) (rcrQ) [MAG: Erysipelatoclostridium sp. An173 isolate 6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG]
MGNQKRNGPKFGHGGMRGNNEKAKDFKGTLTKLFKYLRPYYFKLVVVILFAAASTVFSIVGPKILAKATDKLSEGVLAKV
AGTGGIDFEYIGHIIFILVCLYLVSALFSYIQGFITSTVSQRVAFDLRTSISKKMDRMPLSYFDRHTSGDILSRVTNDID
TIAQSLNQSMSQVITSSVTVVGIFIMMLTISPIMTLIAVCVLPVSVILIGFVMKHSQKYFARQQAALGDVNGHIEEMYGG
HNVVKAFNGEEASVKQFNEYNDVLYESAWKSQFFSGLMQPITGFVGNVGYVAVCLLGGMLASGNTITIGDIQAFIQYVRQ
FNQPISQLAQTMNMLQSTAAAAERVFEFLDEEELAQETPKITSEEVSNIEGSVTFADVNFGYLKDQTIIHNFSLHVHSGQ
TVAIVGPTGAGKTTIVKLLMRFYELNKGSIMIDGKDIRDFSRHDLRSLFGMVLQDTWLFNGTIKENLVYGKLDASDEEIQ
EACKIAYVDHFVQTLENGYETIIDEESSNISQGQKQLLTIARAFLKNPKILILDEATSSVDTRTEVLIQKGMEKLMEGRT
SFVIAHRLSTIRDADTIIVMKDGDIVELGNHDDLIAKNGFYASLYRSQFEGVSQ

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=1162748 ABGT36_RS06090 WP_346677215.1 1182690..1184534(+) (rcrQ) [MAG: Erysipelatoclostridium sp. An173 isolate 6737_HOM_CTRL_s357.ctg000469c_hifiasm_circ MAG]
ATGGGTAATCAAAAAAGAAATGGCCCTAAATTCGGACACGGAGGTATGCGTGGTAATAATGAAAAAGCTAAAGATTTTAA
GGGTACTTTAACAAAGTTATTTAAATATCTAAGACCATATTATTTTAAATTAGTTGTTGTAATTTTATTTGCAGCAGCTT
CAACCGTATTTTCTATTGTTGGTCCTAAAATATTAGCTAAAGCTACTGATAAGTTAAGTGAAGGTGTTTTAGCTAAAGTT
GCTGGTACTGGCGGTATTGATTTTGAATACATTGGACATATCATCTTTATATTAGTATGTTTGTATTTGGTAAGTGCTTT
ATTTAGTTATATCCAAGGATTTATAACTTCAACAGTATCACAACGTGTTGCTTTTGATTTAAGAACATCTATATCAAAGA
AGATGGATCGTATGCCATTAAGTTATTTTGATCGACATACAAGTGGTGATATTTTAAGTAGGGTTACTAATGATATTGAT
ACAATTGCTCAATCATTAAACCAAAGTATGTCACAAGTAATTACTTCATCAGTTACAGTTGTTGGTATTTTTATAATGAT
GTTAACTATTTCGCCAATTATGACATTAATTGCAGTATGTGTTTTACCAGTATCAGTAATTTTGATTGGTTTTGTAATGA
AACATTCACAAAAATATTTTGCTAGACAGCAAGCTGCTTTAGGTGATGTTAATGGTCATATTGAAGAAATGTATGGTGGA
CATAATGTCGTTAAAGCGTTTAATGGTGAAGAAGCATCAGTAAAACAGTTTAATGAATATAATGATGTTTTATATGAAAG
TGCCTGGAAATCACAATTTTTCTCAGGTTTAATGCAACCAATTACGGGATTTGTCGGAAATGTTGGTTATGTTGCAGTAT
GTTTACTAGGTGGAATGTTAGCTAGTGGCAATACAATTACTATTGGTGATATTCAAGCATTTATCCAATATGTAAGACAA
TTTAATCAACCAATTAGTCAATTGGCTCAAACAATGAATATGTTACAAAGTACAGCAGCAGCTGCTGAACGTGTTTTTGA
ATTCTTAGATGAAGAAGAATTAGCTCAAGAAACACCTAAAATTACTAGTGAAGAGGTTAGTAATATTGAAGGTTCAGTAA
CTTTTGCTGATGTAAACTTTGGTTATTTAAAAGATCAAACAATTATTCATAATTTTAGTTTACATGTTCATTCTGGACAA
ACTGTTGCGATTGTTGGACCTACTGGTGCTGGTAAAACAACAATTGTAAAATTATTAATGCGATTCTATGAATTAAATAA
AGGTAGCATAATGATTGATGGTAAAGATATTCGTGATTTTAGCCGCCATGATTTACGTTCTTTATTTGGTATGGTATTGC
AAGATACATGGTTATTTAATGGAACAATTAAAGAAAATTTAGTTTATGGTAAATTAGATGCTAGCGATGAAGAAATTCAA
GAAGCATGTAAGATAGCTTATGTTGATCATTTTGTTCAGACATTGGAAAATGGTTATGAAACAATTATTGATGAAGAATC
GTCTAATATTTCTCAAGGACAAAAACAGCTTTTAACAATTGCTAGAGCATTTTTAAAAAATCCGAAAATTTTAATTCTTG
ATGAAGCAACATCTTCAGTTGATACTAGAACAGAAGTCTTGATTCAAAAAGGAATGGAAAAATTAATGGAAGGAAGAACA
AGCTTCGTTATTGCCCATCGTTTATCAACAATCAGAGATGCTGATACTATTATTGTTATGAAAGATGGCGATATCGTTGA
ACTTGGAAATCACGATGATTTAATTGCTAAAAACGGCTTCTATGCTTCATTATATCGTTCTCAATTTGAAGGAGTATCAC
AATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(45-324)

ABC transporter (ABC_tran)

(390-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.6

94.951

0.48

Multiple sequence alignment