Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABGT43_RS07570 Genome accession   NZ_OZ007009
Coordinates   1550541..1551920 (+) Length   459 a.a.
NCBI ID   WP_346685029.1    Uniprot ID   -
Organism   MAG: Megamonas hypermegale isolate 6737_HOM_CTRL_s274.ctg000360c_hifiasm_circ MAG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1545541..1556920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT43_RS07545 - 1545801..1546247 (+) 447 WP_027890776.1 CtsR family transcriptional regulator -
  ABGT43_RS07550 - 1546266..1546817 (+) 552 WP_087386004.1 UvrB/UvrC motif-containing protein -
  ABGT43_RS07555 - 1546810..1547886 (+) 1077 WP_279223367.1 protein arginine kinase -
  ABGT43_RS07560 - 1547904..1550405 (+) 2502 WP_346685026.1 ATP-dependent Clp protease ATP-binding subunit -
  ABGT43_RS07565 - 1550383..1550529 (+) 147 WP_204966402.1 hypothetical protein -
  ABGT43_RS07570 radA 1550541..1551920 (+) 1380 WP_346685029.1 DNA repair protein RadA Machinery gene
  ABGT43_RS07575 - 1552083..1553219 (+) 1137 WP_027890781.1 PIN/TRAM domain-containing protein -
  ABGT43_RS07580 ispD 1553279..1554025 (+) 747 WP_027890782.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABGT43_RS07585 ispF 1554114..1554593 (+) 480 WP_027890783.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABGT43_RS07590 gltX 1554675..1556156 (+) 1482 WP_346685031.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50844.60 Da        Isoelectric Point: 7.8240

>NTDB_id=1162728 ABGT43_RS07570 WP_346685029.1 1550541..1551920(+) (radA) [MAG: Megamonas hypermegale isolate 6737_HOM_CTRL_s274.ctg000360c_hifiasm_circ MAG]
MAKRKTLYVCQECGYSVPKWLGKCPGCGKWNTLVEELDEPSSFTNINRNFSLNTNKTNSIPKPIKTIETEDLPRFSAGSP
EMNRVLGGGIIPGSLVLMVGDPGVGKSSLNLRICAYVAKKHKVLYVTGEESSRQIRMRADRLNALDDNLYVLSETDLERI
ERHVLEQKPDLLVIDSIQTIFRPDIQSAPGSVSQVRECSVNLLRIAKQNNIAIFIIGHVTKDGTLAGPRVLEHIVDTVLY
FEGERNAEYRVLRAVKNRFGNTNEIGIFEMRENGLVDVPDASKMFLSEQNDNTSGTVIIPALEGTRPLLVEIQSLVAPTP
YVPPRRTSDSIDIKKIQLLLAVLEKRVHLNIGSCDVYVKVAGGIKIDDPAVDLALCCAMASSFRNQNIKPQTIIFGEVGL
AGEVRSVSQPDIRVREAIRMGFTNIILPAKNLDRLEHSSSDVQIHGVRYLSEALKIAFN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1162728 ABGT43_RS07570 WP_346685029.1 1550541..1551920(+) (radA) [MAG: Megamonas hypermegale isolate 6737_HOM_CTRL_s274.ctg000360c_hifiasm_circ MAG]
ATGGCTAAAAGAAAAACTCTTTACGTTTGTCAAGAATGTGGTTATAGTGTGCCAAAATGGTTGGGCAAATGTCCCGGCTG
TGGCAAATGGAATACACTTGTAGAGGAACTGGATGAACCCAGTTCCTTTACTAATATAAACCGCAATTTCAGCTTAAATA
CAAATAAGACAAACTCTATTCCAAAACCAATAAAAACAATTGAAACGGAAGATTTACCTAGATTTTCTGCAGGTTCACCT
GAAATGAACCGCGTATTAGGTGGTGGCATAATACCTGGCTCATTGGTATTGATGGTAGGCGACCCTGGCGTTGGTAAGTC
AAGTTTGAATTTACGCATATGTGCATATGTAGCTAAAAAACACAAAGTTTTATACGTAACGGGCGAAGAAAGTTCCCGCC
AAATTCGCATGCGCGCTGACCGCTTAAATGCATTAGATGACAATTTATATGTACTAAGCGAAACGGATTTAGAGCGCATT
GAACGCCATGTATTAGAACAAAAACCCGATTTACTCGTCATCGATTCCATTCAGACTATTTTTCGTCCTGATATTCAAAG
TGCGCCTGGCAGTGTAAGCCAAGTCCGCGAATGTTCCGTCAATCTTTTGCGCATTGCCAAACAAAATAATATTGCCATTT
TTATAATTGGTCATGTTACAAAAGACGGCACACTCGCTGGCCCGCGTGTACTAGAACATATCGTCGATACAGTATTGTAT
TTTGAAGGCGAACGCAATGCTGAATATCGCGTTTTGCGCGCTGTAAAAAATCGTTTTGGTAACACAAATGAAATCGGCAT
TTTTGAAATGCGCGAAAATGGCTTAGTTGATGTTCCAGATGCTTCAAAAATGTTTTTATCCGAACAAAATGATAACACTT
CGGGAACTGTCATAATTCCTGCATTAGAAGGAACACGTCCACTACTTGTAGAAATTCAATCACTCGTAGCGCCAACGCCT
TATGTGCCACCGCGCAGAACATCTGACTCCATCGATATAAAAAAAATACAGTTGTTATTAGCCGTATTAGAAAAACGTGT
TCATTTAAATATCGGCAGTTGTGATGTCTACGTTAAAGTGGCTGGTGGTATAAAAATAGATGACCCTGCTGTCGACCTCG
CACTATGCTGTGCTATGGCGTCGAGTTTTCGCAATCAAAATATCAAACCACAAACTATTATTTTCGGTGAAGTGGGATTG
GCTGGTGAAGTGCGCTCTGTAAGCCAACCAGATATCAGAGTACGCGAAGCCATTCGCATGGGATTTACAAATATCATCTT
GCCTGCTAAAAATTTAGACCGCCTAGAACATTCCTCTTCCGATGTACAAATTCATGGCGTTCGCTATTTAAGTGAGGCTT
TAAAAATCGCATTTAATTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(355-458)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.391

100

0.525
  radA Streptococcus mitis NCTC 12261

49.13

100

0.492
  radA Streptococcus pneumoniae Rx1

49.13

100

0.492
  radA Streptococcus pneumoniae D39

49.13

100

0.492
  radA Streptococcus pneumoniae R6

49.13

100

0.492
  radA Streptococcus pneumoniae TIGR4

49.13

100

0.492
  radA Streptococcus mitis SK321

49.13

100

0.492

Multiple sequence alignment