Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ABGT34_RS04715 Genome accession   NZ_OZ006997
Coordinates   1012231..1013058 (+) Length   275 a.a.
NCBI ID   WP_278852445.1    Uniprot ID   -
Organism   MAG: Ligilactobacillus aviarius isolate pooled_s2189.ctg002983c_hifiasm_circ MAG     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1007231..1018058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT34_RS04690 - 1007574..1008899 (-) 1326 WP_283601385.1 HD domain-containing protein -
  ABGT34_RS04695 - 1009054..1009491 (+) 438 WP_057826948.1 DUF1934 domain-containing protein -
  ABGT34_RS04700 rpoE 1009536..1010084 (+) 549 WP_057826947.1 DNA-directed RNA polymerase subunit delta -
  ABGT34_RS04705 - 1010242..1011846 (+) 1605 WP_057826946.1 CTP synthase -
  ABGT34_RS04710 - 1011916..1012134 (+) 219 WP_057826945.1 LBP_cg2779 family protein -
  ABGT34_RS04715 endA 1012231..1013058 (+) 828 WP_278852445.1 DNA/RNA non-specific endonuclease Machinery gene
  ABGT34_RS04720 - 1013182..1014456 (+) 1275 WP_346677151.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ABGT34_RS04725 rho 1014470..1015855 (+) 1386 WP_283599574.1 transcription termination factor Rho -
  ABGT34_RS04730 - 1015971..1016222 (+) 252 WP_057826942.1 type B 50S ribosomal protein L31 -
  ABGT34_RS04735 trxA 1016386..1016697 (+) 312 WP_064208551.1 thioredoxin -
  ABGT34_RS04740 trxB 1016714..1017643 (+) 930 WP_283599573.1 thioredoxin-disulfide reductase -

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 29942.41 Da        Isoelectric Point: 10.1389

>NTDB_id=1162706 ABGT34_RS04715 WP_278852445.1 1012231..1013058(+) (endA) [MAG: Ligilactobacillus aviarius isolate pooled_s2189.ctg002983c_hifiasm_circ MAG]
MAKRKRKKQKVTPSQVIITVLAAILIVLAGGRVSGKLGRLDLGMTQNVRAGQNTPNQKLASSVLTDSVKQQLGGSITYNG
HGAFIINNNQNDLNAQIASAPYATDEVDNLGRPHIGNAWLNKTCRQYKNREQTGNGRTDWKPAGFHQLSGLPGEYKHAYD
RGHLLGYALVGGIRGFNASESNPANVATQTAWANEARSADSTGQNYYEGLVRKALDQNKQVRYRVTDIYDGNNLVPSGAH
IEAKSSDGSLEFNVFVPNVQNNIRINYATGYATQN

Nucleotide


Download         Length: 828 bp        

>NTDB_id=1162706 ABGT34_RS04715 WP_278852445.1 1012231..1013058(+) (endA) [MAG: Ligilactobacillus aviarius isolate pooled_s2189.ctg002983c_hifiasm_circ MAG]
ATGGCAAAGAGAAAACGCAAAAAGCAAAAGGTTACTCCGTCACAGGTTATTATTACGGTCTTAGCCGCAATTTTGATCGT
GCTTGCCGGAGGAAGAGTTTCTGGTAAACTAGGCCGGCTTGATCTTGGAATGACGCAAAATGTCCGGGCAGGTCAGAATA
CTCCGAATCAAAAGTTGGCATCAAGCGTATTAACGGATAGTGTTAAACAACAGCTTGGGGGTTCGATCACCTATAACGGG
CATGGGGCGTTCATTATCAACAATAATCAAAATGATTTGAATGCGCAGATTGCAAGTGCGCCGTATGCAACGGATGAAGT
TGATAACTTGGGCCGGCCGCACATTGGAAATGCATGGTTGAATAAGACTTGCCGGCAGTACAAAAACCGGGAGCAAACTG
GGAACGGTCGCACCGATTGGAAACCAGCCGGATTTCATCAATTAAGCGGATTACCGGGAGAATATAAGCATGCTTATGAT
CGGGGACACCTGTTAGGATATGCATTGGTTGGCGGAATTCGTGGCTTTAACGCTTCGGAATCGAATCCGGCCAACGTTGC
AACCCAAACTGCATGGGCCAACGAAGCCCGGTCAGCAGATTCAACGGGGCAGAATTATTATGAAGGATTAGTCCGGAAAG
CGCTTGATCAAAATAAGCAAGTTCGTTACCGGGTGACTGATATTTATGACGGTAATAATTTAGTTCCGTCAGGGGCGCAT
ATTGAAGCTAAGTCGTCCGATGGATCATTAGAATTTAACGTTTTTGTTCCGAATGTTCAAAACAATATTCGGATCAATTA
CGCAACGGGCTACGCGACACAAAATTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(110-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.09

81.091

0.487
  endA Streptococcus pneumoniae D39

60.09

81.091

0.487
  endA Streptococcus pneumoniae R6

60.09

81.091

0.487
  endA Streptococcus pneumoniae TIGR4

60.09

81.091

0.487

Multiple sequence alignment