Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABGT34_RS01560 Genome accession   NZ_OZ006997
Coordinates   310814..312622 (-) Length   602 a.a.
NCBI ID   WP_278851818.1    Uniprot ID   -
Organism   MAG: Ligilactobacillus aviarius isolate pooled_s2189.ctg002983c_hifiasm_circ MAG     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 305814..317622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT34_RS01530 - 306016..307038 (+) 1023 WP_283577121.1 lactonase family protein -
  ABGT34_RS01535 - 307059..307655 (+) 597 WP_278851811.1 copper homeostasis protein CutC -
  ABGT34_RS01540 - 307668..308582 (-) 915 WP_346676697.1 RluA family pseudouridine synthase -
  ABGT34_RS01545 - 308572..309378 (-) 807 WP_064208081.1 NAD kinase -
  ABGT34_RS01550 - 309375..310013 (-) 639 WP_057827608.1 GTP pyrophosphokinase family protein -
  ABGT34_RS01555 - 310149..310781 (+) 633 WP_278851816.1 DsbA family protein -
  ABGT34_RS01560 pepF 310814..312622 (-) 1809 WP_278851818.1 oligoendopeptidase F Regulator
  ABGT34_RS01565 - 312660..313568 (-) 909 WP_278851820.1 competence protein CoiA family protein -
  ABGT34_RS01570 - 313614..314390 (-) 777 WP_204778966.1 adaptor protein MecA -
  ABGT34_RS01575 spxA 314503..314901 (-) 399 WP_057827603.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69842.27 Da        Isoelectric Point: 4.7694

>NTDB_id=1162698 ABGT34_RS01560 WP_278851818.1 310814..312622(-) (pepF) [MAG: Ligilactobacillus aviarius isolate pooled_s2189.ctg002983c_hifiasm_circ MAG]
MTEIKKVPARSEVPEKLTWDLERVYQSIEEWKKDQRKLENKLDEFKHAKDQLEMNADKFLEVIEQYLEIMRIYEKLAVFA
SMKNDQDTTNSQYQELQGMADNLGTQVSEAVAWFQPALVHLDDQVVQDYFHQNSKLKPYRHFITELRSQREHLLSDAQEE
LLAAAGNIFGAPEKTFEMLSDADLKFPVVEGENGQKVELSEGTYSKLLESVDQKVRQGAFKALYQTYGAFKNTFATTLTS
QVQVQNYQAKVRHYASAKDAALSENHIPDKVYDVLIDEVHRNLPLLHRYIKLRGEVLNLDKVHMYDLYTPIVKESNLSFT
YPEAQAKALEALQVYGDDYLQHVQEAFDNRWIDVVENKGKRTGAYSSGGYDTDPYILLNWQDGLEDLYTLVHEMGHSMHS
YYTTHTQPYVYGDYPIFVAEIASTTNENLLTDYLLKTEKDPQVRAFVLNHYLDGFKGTIFRQTQFAEFEQWIHEQDASGK
SLTADSISKFYGDLNKQYYGPAIYNDDEIAMEWMRIPHFYYDFYVYQYATGFAAATTLSQRIEDDDPAHTEAYLNFLKSG
SSAYPIETMQKAGVDMTQRAYLEKAFKVFEERLNELEKLIVK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1162698 ABGT34_RS01560 WP_278851818.1 310814..312622(-) (pepF) [MAG: Ligilactobacillus aviarius isolate pooled_s2189.ctg002983c_hifiasm_circ MAG]
ATGACAGAAATTAAAAAGGTTCCCGCACGTTCAGAAGTTCCTGAGAAATTAACGTGGGATTTGGAACGGGTTTACCAATC
AATTGAAGAATGGAAAAAGGATCAACGGAAATTAGAAAACAAATTAGATGAATTCAAACATGCCAAAGACCAATTGGAAA
TGAACGCGGATAAATTTTTAGAGGTAATTGAACAGTACCTTGAAATTATGCGGATTTATGAAAAGCTTGCGGTCTTTGCA
TCGATGAAAAATGATCAAGACACGACTAATTCGCAGTATCAAGAACTGCAAGGAATGGCAGATAATTTAGGAACGCAAGT
CAGTGAAGCAGTTGCGTGGTTCCAACCAGCACTTGTTCATCTTGATGATCAAGTCGTTCAGGATTATTTTCACCAGAATT
CAAAGCTTAAACCATACCGGCACTTTATTACTGAATTACGTTCACAGCGCGAGCATTTGTTAAGCGATGCGCAAGAAGAG
TTATTGGCTGCAGCGGGGAACATTTTTGGCGCTCCCGAAAAAACATTTGAAATGTTAAGTGATGCGGATTTAAAGTTTCC
GGTTGTTGAAGGAGAAAATGGGCAAAAAGTTGAGCTTTCAGAAGGAACATACAGTAAATTACTCGAATCGGTTGATCAAA
AGGTTCGCCAAGGGGCATTTAAGGCGTTATATCAAACGTATGGGGCATTTAAAAATACATTTGCAACAACATTAACTTCA
CAGGTTCAAGTGCAAAATTATCAAGCAAAAGTTCGACATTATGCTTCTGCAAAGGATGCAGCGTTAAGTGAAAATCACAT
TCCGGATAAAGTATACGATGTTTTAATTGACGAAGTTCACCGAAATTTACCATTGTTACACCGTTATATTAAATTGCGCG
GCGAAGTTTTAAATTTGGATAAGGTTCATATGTACGACTTGTACACGCCAATTGTGAAGGAAAGCAATTTATCATTTACA
TATCCTGAAGCTCAGGCTAAAGCACTTGAGGCTCTTCAAGTTTATGGTGACGATTATCTTCAGCATGTCCAAGAAGCCTT
TGATAATCGTTGGATCGATGTTGTTGAAAATAAAGGCAAACGAACCGGGGCATATTCTTCGGGCGGATATGACACCGATC
CATATATCCTGTTAAATTGGCAAGATGGATTGGAAGATCTGTATACGCTGGTTCATGAAATGGGACACAGTATGCACAGC
TATTATACGACGCATACCCAACCATATGTATACGGCGATTATCCGATCTTTGTTGCGGAAATTGCATCAACTACGAATGA
AAACTTACTTACGGATTACTTATTGAAGACGGAAAAGGATCCCCAAGTTCGGGCATTCGTTTTAAACCATTATTTAGATG
GCTTTAAAGGAACAATTTTTAGACAAACTCAATTTGCGGAGTTTGAACAGTGGATCCATGAACAGGATGCCAGCGGAAAG
TCATTGACGGCGGATTCAATTTCAAAATTTTATGGTGACTTGAATAAGCAATATTATGGCCCGGCAATTTATAATGATGA
TGAAATTGCGATGGAATGGATGCGGATCCCGCATTTTTACTACGACTTTTATGTATATCAATATGCAACCGGCTTTGCAG
CCGCAACAACGTTATCGCAACGGATTGAAGATGATGATCCGGCGCACACCGAAGCATATTTGAACTTTTTAAAGTCTGGG
AGTTCAGCATATCCAATTGAAACGATGCAAAAAGCGGGCGTTGATATGACGCAACGCGCATATTTAGAAAAGGCATTTAA
GGTTTTTGAAGAACGGTTAAATGAACTTGAAAAATTGATTGTGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.951

98.505

0.522

Multiple sequence alignment