Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABGT69_RS08455 Genome accession   NZ_OZ006982
Coordinates   1696185..1697561 (+) Length   458 a.a.
NCBI ID   WP_062812459.1    Uniprot ID   -
Organism   MAG: Limosilactobacillus oris isolate metabat2_pooled_metaflye.974 MAG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1691185..1702561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT69_RS08425 - 1691304..1691987 (+) 684 WP_191363256.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ABGT69_RS08430 - 1691989..1692855 (+) 867 WP_191363197.1 alpha/beta hydrolase -
  ABGT69_RS08435 - 1692925..1694265 (-) 1341 WP_062812462.1 aminopeptidase C -
  ABGT69_RS08440 rpiA 1694516..1695199 (-) 684 WP_062812461.1 ribose-5-phosphate isomerase RpiA -
  ABGT69_RS08445 - 1695210..1695506 (-) 297 WP_062812460.1 GNAT family N-acetyltransferase -
  ABGT69_RS08450 - 1695635..1696171 (+) 537 WP_039930098.1 dUTP diphosphatase -
  ABGT69_RS08455 radA 1696185..1697561 (+) 1377 WP_062812459.1 DNA repair protein RadA Machinery gene
  ABGT69_RS08460 - 1697588..1698721 (+) 1134 WP_191363198.1 PIN/TRAM domain-containing protein -
  ABGT69_RS08465 cysS 1699159..1700574 (+) 1416 WP_191363199.1 cysteine--tRNA ligase -
  ABGT69_RS08470 - 1700586..1700999 (+) 414 WP_004564552.1 Mini-ribonuclease 3 -
  ABGT69_RS08475 rlmB 1700989..1701735 (+) 747 WP_191363200.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABGT69_RS08480 rpmG 1701800..1701949 (+) 150 WP_191363201.1 50S ribosomal protein L33 -
  ABGT69_RS08485 secE 1701961..1702137 (+) 177 WP_003716062.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49978.20 Da        Isoelectric Point: 8.7016

>NTDB_id=1162684 ABGT69_RS08455 WP_062812459.1 1696185..1697561(+) (radA) [MAG: Limosilactobacillus oris isolate metabat2_pooled_metaflye.974 MAG]
MAKVRTQYVCQNCGYSSRRYLGRCPNCGEWNSLVEEQVQSESKAAATRATTTLTGLVAKPQKISEINSKETPRVKTKLNE
LNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSDEHHRVLYVSGEESGTQIKMRAERLGVSGDEFYVYPETNMDSI
KETIRDLKPEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITVFVVGHVTKGGALAGPKILEHMVDTVLY
FEGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLSEVKNPSEIFLEERLRDATGSSVVVSLEGTRPILVEIQALVTPTV
YGNAQRTATGLSRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTRPADAFVGEVGL
TGEIRRVNRIEQRVAEAQKLGFERIFIPKNNLKGWTPPTGIEVVGVTTLREALRLALG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1162684 ABGT69_RS08455 WP_062812459.1 1696185..1697561(+) (radA) [MAG: Limosilactobacillus oris isolate metabat2_pooled_metaflye.974 MAG]
ATGGCAAAGGTACGGACACAGTACGTGTGTCAAAATTGCGGTTATAGCTCCCGCCGTTACCTTGGTCGGTGCCCCAACTG
CGGGGAATGGAACTCGTTGGTAGAAGAACAAGTTCAATCAGAAAGCAAGGCCGCGGCGACGCGGGCAACGACGACCCTGA
CCGGGTTGGTTGCTAAGCCGCAAAAAATTAGTGAAATTAATAGTAAGGAAACGCCCCGGGTCAAGACCAAGCTCAATGAG
CTGAACCGGGTTCTCGGTGGTGGGATCGTTCCTGGCTCCCTAATCCTGATTGGTGGGGATCCCGGTATCGGGAAATCAAC
CCTCCTTCTTCAGGTTTCCGGCCAGCTCAGTGACGAACACCACCGGGTCCTGTATGTTTCAGGAGAGGAAAGCGGCACCC
AGATTAAGATGCGGGCAGAACGCCTCGGCGTGTCCGGGGATGAATTTTATGTTTACCCGGAAACCAATATGGATAGTATT
AAGGAAACGATCCGTGACCTCAAGCCCGAATACGTAGTGATTGACTCTGTCCAAACAATGCAGGCAACGGACGTCAGTTC
AGCAATCGGTAGTGTTTCTCAAATTCGGGAAGTTACTGCCCAGTTGATGCAAATTGCCAAGAGCAATAACATTACGGTTT
TCGTCGTGGGCCACGTGACCAAAGGCGGTGCCCTAGCCGGGCCGAAGATTCTGGAGCACATGGTGGACACAGTGCTCTAC
TTTGAAGGGGACCTCCACCATACTTACCGGATCCTCCGCTCGGTCAAGAACCGTTTTGGCTCGACCAATGAACTGGGGAT
TTTTGAAATGCACACCAACGGCCTCAGTGAGGTCAAGAACCCCTCAGAGATTTTTCTTGAGGAACGACTTCGTGATGCCA
CCGGTTCTTCCGTAGTGGTTTCCCTGGAGGGGACGCGGCCCATTCTGGTAGAAATTCAAGCCCTGGTGACTCCCACGGTC
TACGGGAATGCGCAGCGAACTGCTACCGGTTTAAGTCGAAACAGAGTATCATTGATAATGGCCGTCTTGGAAAAGCGAGC
CAACCTGATGCTGCAAAATCAGGATGCCTACCTCAAAGCAGCGGGCGGTGTCAAGCTGGATGAACCGGCAATCGACCTGG
CAATCGCGGTCAGCATTGCTTCCAGCTACCGGGATAAGGGGACACGTCCCGCCGACGCCTTCGTTGGCGAAGTCGGTTTG
ACCGGTGAAATTCGCCGGGTGAACCGGATTGAACAGCGGGTCGCTGAGGCGCAGAAGCTCGGCTTTGAACGAATCTTCAT
CCCCAAGAACAACTTAAAGGGGTGGACACCACCAACCGGGATTGAGGTCGTCGGGGTTACGACTTTACGTGAAGCACTCC
GGCTGGCCCTCGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

67.181

99.127

0.666
  radA Streptococcus mitis NCTC 12261

67.181

99.127

0.666
  radA Streptococcus pneumoniae Rx1

66.96

99.127

0.664
  radA Streptococcus pneumoniae D39

66.96

99.127

0.664
  radA Streptococcus pneumoniae R6

66.96

99.127

0.664
  radA Streptococcus pneumoniae TIGR4

66.96

99.127

0.664
  radA Bacillus subtilis subsp. subtilis str. 168

63.478

100

0.638

Multiple sequence alignment