Detailed information NTG1162668

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABGT35_RS05170
• Genome accession: NZ_OZ006975
• Coordinates: 1059518..1060462 (-)
• Length: 314 a.a.
• NCBI ID: WP_288946585.1
• Uniprot ID: -
• Organism: MAG: Megasphaera stantonii isolate
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1054518..1065462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABGT35_RS05155	-	1057133..1058299 (-)	1167	WP_087477526.1	efflux RND transporter periplasmic adaptor subunit	-
ABGT35_RS05160	-	1058296..1058877 (-)	582	WP_087477527.1	TetR/AcrR family transcriptional regulator	-
ABGT35_RS05165	-	1059023..1059505 (-)	483	WP_288946588.1	YhcH/YjgK/YiaL family protein	-
ABGT35_RS05170	pilA	1059518..1060462 (-)	945	WP_288946585.1	signal recognition particle-docking protein FtsY	Machinery gene
ABGT35_RS05175	smc	1060465..1064010 (-)	3546	WP_346683636.1	chromosome segregation protein SMC	-
ABGT35_RS05180	-	1064052..1064738 (-)	687	WP_087477531.1	DUF554 domain-containing protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 34186.05 Da
• Isoelectric Point: 4.8683

>NTDB_id=1162668 ABGT35_RS05170 WP_288946585.1 1059518..1060462(-) (pilA) [MAG: Megasphaera stantonii isolate]
MGFFSKLRKGLEKTKKSFIQNIETVVRGYAKIDDEMYEDLEAVMLTSDIGVETTDYLLGKIREGVKSKEIRDGNDVVPYL
EKCVVELLEENAEPMPDRTGTTEVIFIVGVNGVGKTTTIGKLAKYYTQQGKKVMLAAGDTFRAAASEQLTIWAERNDVPI
VKHQEGADAAAVVFDATASAKARGIDVLLVDTAGRLHTKSNLMEELRKMARVAGRNIDGAPHETLLVLDATTGQNAVSQA
KLFGEVVPLTGVVLTKLDGTAKGGIILSIKRELGVPVRWVGVGEGVDDLRPFDAAQFADALFDKNVTQREQEED

Nucleotide

• Length: 945 bp

>NTDB_id=1162668 ABGT35_RS05170 WP_288946585.1 1059518..1060462(-) (pilA) [MAG: Megasphaera stantonii isolate]
ATGGGCTTTTTTTCAAAATTGCGCAAAGGTCTGGAAAAGACGAAGAAATCATTTATTCAGAATATTGAAACGGTCGTCCG
CGGCTACGCCAAGATCGACGACGAAATGTACGAGGATTTGGAAGCGGTCATGCTGACCAGCGATATTGGCGTCGAAACGA
CGGATTACCTGCTGGGAAAAATCAGAGAAGGCGTTAAATCGAAAGAGATTCGCGACGGAAACGACGTCGTTCCTTATTTG
GAAAAATGCGTCGTCGAGCTGCTGGAGGAAAACGCTGAGCCCATGCCGGACCGGACGGGGACGACGGAGGTCATCTTCAT
CGTCGGCGTCAACGGCGTCGGCAAGACGACGACTATCGGCAAGCTGGCCAAGTATTACACCCAGCAGGGGAAAAAGGTCA
TGCTGGCCGCCGGTGATACGTTCCGCGCCGCTGCGTCGGAGCAGCTGACGATTTGGGCCGAACGGAACGACGTGCCTATC
GTAAAGCATCAGGAAGGGGCCGACGCGGCGGCCGTCGTATTCGACGCTACGGCTTCAGCTAAGGCCAGGGGCATCGACGT
ACTCCTCGTCGATACGGCCGGACGGCTTCACACGAAATCAAACCTCATGGAAGAGCTGCGGAAGATGGCCCGCGTGGCCG
GCCGCAACATCGACGGCGCGCCTCATGAAACGCTGCTGGTCCTCGACGCGACGACGGGACAGAACGCCGTCAGCCAGGCC
AAGCTGTTCGGCGAGGTCGTGCCCCTGACGGGCGTCGTGCTGACCAAGCTCGACGGCACGGCCAAGGGCGGCATTATCTT
GTCTATCAAGCGGGAATTGGGCGTGCCCGTCCGTTGGGTCGGCGTCGGTGAAGGCGTCGACGATTTGCGGCCCTTCGACG
CGGCCCAATTTGCCGATGCGCTGTTTGATAAAAACGTAACGCAGCGGGAACAGGAAGAAGACTAG

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (103-302)

• SRP54-type protein, helical bundle domain (SRP54_N) (21-79)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.164	97.134	0.487