Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABGT46_RS10045 Genome accession   NZ_OZ006974
Coordinates   2101689..2103068 (-) Length   459 a.a.
NCBI ID   WP_346687427.1    Uniprot ID   -
Organism   MAG: Megamonas hypermegale isolate 6755_HET_CTRL_s80.ctg000101c_hifiasm_circ MAG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2096689..2108068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT46_RS10025 gltX 2097342..2098826 (-) 1485 WP_303691039.1 glutamate--tRNA ligase -
  ABGT46_RS10030 ispF 2098909..2099385 (-) 477 WP_303691037.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABGT46_RS10035 ispD 2099553..2100299 (-) 747 WP_289547857.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABGT46_RS10040 - 2100357..2101490 (-) 1134 WP_289547858.1 PIN/TRAM domain-containing protein -
  ABGT46_RS10045 radA 2101689..2103068 (-) 1380 WP_346687427.1 DNA repair protein RadA Machinery gene
  ABGT46_RS10050 - 2103706..2106222 (-) 2517 WP_346687429.1 ATP-dependent Clp protease ATP-binding subunit -
  ABGT46_RS10055 - 2106225..2107298 (-) 1074 WP_303996659.1 protein arginine kinase -
  ABGT46_RS10060 - 2107291..2107845 (-) 555 WP_303996660.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50673.41 Da        Isoelectric Point: 8.0331

>NTDB_id=1162658 ABGT46_RS10045 WP_346687427.1 2101689..2103068(-) (radA) [MAG: Megamonas hypermegale isolate 6755_HET_CTRL_s80.ctg000101c_hifiasm_circ MAG]
MAKRKTLYVCQECGYSVPKWLGKCPGCGKWNTLVEELEDTGSSAGLNRGFSLNATKTNTVPRPIKEITTEDLPRFSAGSP
EMNRVLGGGIIPGSLVLMVGDPGVGKSSLNLRICAHVAKNHRVLYVTGEESSRQIRMRADRLNALNDNLYVLSETDLERI
ERHVLDQKPDLLIIDSIQTIFRPDIQSAPGSVSQVRECSVSLLRIAKQNNITIFIIGHVTKDGTLAGPRVLEHIVDTVLY
FEGERNAEYRVLRAVKNRFGNTNEIGIFEMRENGLIDVPDASKMFLSEQTDSVSGTVIIPALEGTRPLLVEIQSLVAPTP
YVPPRRTSDSIDIKKIQLLLAVLEKRVHLNIGSCDVYVKVAGGIKIDDPAVDLALCCAMASSFRNQSIKAQTIIFGEVGL
SGEVRSVSQPDIRVREAVRMGFTNIILPYKNLERLDNYSGNINIHGVKYLSEALRYIFA

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1162658 ABGT46_RS10045 WP_346687427.1 2101689..2103068(-) (radA) [MAG: Megamonas hypermegale isolate 6755_HET_CTRL_s80.ctg000101c_hifiasm_circ MAG]
ATGGCTAAAAGAAAAACATTGTATGTTTGTCAGGAATGCGGCTACAGTGTGCCGAAATGGCTGGGCAAATGTCCCGGCTG
CGGCAAATGGAATACGCTCGTGGAGGAACTGGAAGATACCGGTTCTTCTGCCGGTTTAAACCGCGGTTTCAGCCTGAACG
CCACCAAGACGAACACTGTGCCCAGACCGATAAAGGAAATAACGACGGAAGACCTGCCGCGCTTTTCCGCCGGTTCGCCG
GAGATGAACCGCGTACTCGGCGGCGGCATTATTCCCGGCTCGCTCGTGCTCATGGTCGGCGACCCCGGCGTGGGCAAGTC
GAGCCTTAACCTGCGCATCTGCGCTCATGTCGCCAAAAATCACCGCGTACTGTACGTAACGGGCGAAGAAAGCTCCCGCC
AAATCCGCATGCGCGCCGACAGACTGAATGCGCTTAACGATAATCTGTACGTTCTGAGCGAAACGGATTTGGAACGCATT
GAACGCCACGTACTCGACCAGAAACCCGATTTGCTCATCATCGACTCCATTCAGACGATTTTCCGTCCCGATATTCAGAG
CGCACCGGGCAGCGTCAGCCAGGTACGCGAATGTTCCGTGAGCCTTCTGCGCATTGCCAAGCAGAACAATATCACCATTT
TCATCATCGGCCATGTAACAAAAGACGGTACGCTCGCCGGTCCGCGCGTACTGGAACATATCGTCGATACCGTACTGTAC
TTTGAAGGCGAGCGCAATGCCGAATACCGCGTGCTGCGCGCCGTGAAAAACCGTTTCGGCAACACGAACGAAATCGGCAT
ATTTGAAATGCGCGAAAACGGCTTAATCGACGTGCCCGACGCTTCTAAAATGTTTCTGTCCGAACAGACAGACAGCGTCT
CCGGTACGGTAATCATTCCCGCGCTGGAAGGAACGCGCCCGCTTCTGGTGGAAATCCAGTCGCTCGTCGCACCGACGCCG
TACGTACCGCCGCGCCGCACATCCGACTCTATTGACATAAAGAAAATTCAGCTGCTGCTCGCCGTGCTGGAAAAACGCGT
TCATCTCAATATCGGCAGCTGCGACGTTTATGTAAAAGTCGCCGGCGGCATAAAAATTGACGACCCGGCCGTCGACCTCG
CGCTCTGCTGCGCTATGGCATCGAGTTTCCGCAATCAGAGCATCAAAGCGCAGACCATCATCTTCGGTGAAGTGGGGCTG
TCGGGCGAAGTCCGCTCTGTCAGTCAGCCCGATATCAGAGTGCGCGAAGCTGTCCGCATGGGCTTTACCAATATCATACT
CCCTTACAAAAATCTCGAACGGCTTGACAACTATTCAGGCAATATTAATATTCACGGCGTAAAATATCTTAGCGAAGCGC
TTCGCTATATTTTCGCCTGA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(355-454)

AAA domain (AAA_25)

(71-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.412

99.346

0.521
  radA Streptococcus pneumoniae Rx1

48.584

100

0.486
  radA Streptococcus pneumoniae D39

48.584

100

0.486
  radA Streptococcus pneumoniae R6

48.584

100

0.486
  radA Streptococcus pneumoniae TIGR4

48.584

100

0.486
  radA Streptococcus mitis NCTC 12261

48.584

100

0.486
  radA Streptococcus mitis SK321

48.584

100

0.486

Multiple sequence alignment