Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AADG54_RS19345 Genome accession   NZ_OZ001727
Coordinates   4107812..4108441 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain HET6 MIAE 10510     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4102812..4113441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG54_RS19325 (FLLPOIKF_03788) ycbZ 4103202..4104962 (-) 1761 WP_000156479.1 Lon protease family protein -
  AADG54_RS19330 (FLLPOIKF_03789) matP 4105148..4105600 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AADG54_RS19335 (FLLPOIKF_03790) ompA 4105675..4106727 (-) 1053 WP_000750418.1 porin OmpA -
  AADG54_RS19340 (FLLPOIKF_03791) sulA 4107084..4107593 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  AADG54_RS19345 (FLLPOIKF_03792) sxy/tfoX 4107812..4108441 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AADG54_RS19350 (FLLPOIKF_03793) yccS 4108404..4110566 (-) 2163 WP_001550920.1 YccS family putative transporter -
  AADG54_RS19355 (FLLPOIKF_03794) yccF 4110576..4111022 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AADG54_RS19360 (FLLPOIKF_03795) helD 4111145..4113199 (+) 2055 WP_001550921.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1162577 AADG54_RS19345 WP_000839153.1 4107812..4108441(+) (sxy/tfoX) [Escherichia coli strain HET6 MIAE 10510]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1162577 AADG54_RS19345 WP_000839153.1 4107812..4108441(+) (sxy/tfoX) [Escherichia coli strain HET6 MIAE 10510]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment