Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   U9976_RS09625 Genome accession   NZ_OY986434
Coordinates   1928452..1928685 (+) Length   77 a.a.
NCBI ID   WP_322757051.1    Uniprot ID   -
Organism   Synechococcus sp. CBW1107 isolate KAC_102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1923452..1933685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9976_RS09595 (IFHNHDMJ_01940) - 1924948..1925178 (+) 231 WP_322757047.1 cupin domain-containing protein -
  U9976_RS09600 (IFHNHDMJ_01941) - 1925335..1926615 (+) 1281 WP_322757048.1 MFS transporter -
  U9976_RS09605 (IFHNHDMJ_01942) - 1926612..1926767 (+) 156 WP_322757049.1 hypothetical protein -
  U9976_RS09610 (IFHNHDMJ_01943) - 1926771..1927556 (+) 786 WP_322757050.1 polysaccharide deacetylase family protein -
  U9976_RS09615 - 1927575..1927700 (-) 126 WP_255518212.1 hypothetical protein -
  U9976_RS09620 (IFHNHDMJ_01944) - 1927752..1928495 (+) 744 WP_416223833.1 ATP-dependent DNA helicase -
  U9976_RS09625 (IFHNHDMJ_01945) recD2 1928452..1928685 (+) 234 WP_322757051.1 ATP-binding domain-containing protein Machinery gene
  U9976_RS09630 (IFHNHDMJ_01946) - 1929308..1931611 (-) 2304 WP_322757052.1 hypothetical protein -
  U9976_RS09635 (IFHNHDMJ_01947) - 1932018..1932410 (-) 393 WP_322757053.1 helix-turn-helix domain-containing protein -
  U9976_RS09640 (IFHNHDMJ_01948) - 1932453..1932806 (-) 354 WP_322757054.1 hypothetical protein -
  U9976_RS09645 (IFHNHDMJ_01949) - 1932874..1933269 (-) 396 WP_322757055.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 8683.26 Da        Isoelectric Point: 10.4437

>NTDB_id=1162514 U9976_RS09625 WP_322757051.1 1928452..1928685(+) (recD2) [Synechococcus sp. CBW1107 isolate KAC_102]
MPAYACTIHKSQGSEYPAVVIPLLTQHYAMLQRDLVYTGITRGKQLVVLVGQKKALAMAIKNHLGRRRYTNLAEWLS

Nucleotide


Download         Length: 234 bp        

>NTDB_id=1162514 U9976_RS09625 WP_322757051.1 1928452..1928685(+) (recD2) [Synechococcus sp. CBW1107 isolate KAC_102]
GTGCCCGCCTATGCCTGCACGATCCACAAGAGCCAGGGCAGTGAATACCCCGCCGTGGTGATCCCCCTGCTCACCCAGCA
CTACGCGATGCTGCAGCGCGACCTGGTGTACACCGGCATCACCCGCGGGAAGCAGCTGGTGGTGCTGGTGGGCCAGAAGA
AGGCGTTGGCGATGGCCATCAAGAATCACCTGGGGCGCAGGCGCTACACCAATCTGGCGGAGTGGCTCAGCTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(2-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.333

97.403

0.481

Multiple sequence alignment