Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AACH02_RS15465 Genome accession   NZ_OY970450
Coordinates   3289821..3291203 (-) Length   460 a.a.
NCBI ID   WP_033749394.1    Uniprot ID   A0A2J9E5E8
Organism   Pantoea sp. Nvir isolate PANNVG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3284821..3296203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH02_RS15450 (PANNVG_03006) deoR 3285751..3286524 (+) 774 WP_338458497.1 DNA-binding transcriptional repressor DeoR -
  AACH02_RS15455 (PANNVG_03007) ettA 3286658..3288325 (+) 1668 WP_103793883.1 energy-dependent translational throttle protein EttA -
  AACH02_RS15460 (PANNVG_03008) nadR 3288538..3289770 (-) 1233 WP_103793882.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  AACH02_RS15465 (PANNVG_03009) radA 3289821..3291203 (-) 1383 WP_033749394.1 DNA repair protein RadA Machinery gene
  AACH02_RS15470 (PANNVG_03010) serB 3291214..3292191 (-) 978 WP_103793881.1 phosphoserine phosphatase -
  AACH02_RS15475 (PANNVG_03011) - 3292299..3292958 (+) 660 WP_103793880.1 YtjB family periplasmic protein -
  AACH02_RS15480 (PANNVG_03012) yjjG 3293053..3293733 (-) 681 WP_103793879.1 pyrimidine 5'-nucleotidase -
  AACH02_RS15485 (PANNVG_03013) rimI 3293751..3294191 (-) 441 WP_338458498.1 ribosomal protein S18-alanine N-acetyltransferase -
  AACH02_RS15490 (PANNVG_03014) - 3294163..3294573 (-) 411 WP_103793878.1 DNA polymerase III subunit psi -
  AACH02_RS15495 (PANNVG_03015) rsmC 3294681..3295712 (+) 1032 WP_103793877.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49333.91 Da        Isoelectric Point: 7.4215

>NTDB_id=1162320 AACH02_RS15465 WP_033749394.1 3289821..3291203(-) (radA) [Pantoea sp. Nvir isolate PANNVG]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGVSRVQKLSEISLEALPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQEMKTLYVTGEESLQQVAMRAHRLGLPSENLNMLSETSIE
QICQIAEQEEPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKAVDGMKVYSAKKLADALAILDEL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1162320 AACH02_RS15465 WP_033749394.1 3289821..3291203(-) (radA) [Pantoea sp. Nvir isolate PANNVG]
TTGGCCAAAGCGGCAAAACGCGCCTTCGTTTGTAACGAATGCGGCGCAGATTATCCCCGCTGGCAGGGGCAATGCAGCGC
CTGCCACGCCTGGAACACCATCACCGAAGTGCGTATTGCGGCGTCGCCGGCGGCGGCGCGCAATGAGCGCCTGAGCGGCT
ACGCCGGCAGCGCAGGCGTCAGCCGGGTGCAGAAGCTGTCGGAAATCAGCCTGGAGGCGCTGCCGCGCTTCTCGACCGGC
TTCAAAGAGTTTGACCGCGTGCTGGGCGGCGGCGTGGTGCCGGGCAGCGCCATCCTGATTGGCGGCAACCCCGGCGCGGG
GAAATCGACGCTGCTGCTGCAGGTGATGTGCCGCCTGGCGCAGGAGATGAAAACCCTCTACGTCACCGGCGAAGAGTCGC
TGCAGCAGGTAGCGATGCGCGCGCACCGCCTCGGCCTGCCGAGCGAAAACCTCAATATGCTGTCGGAAACCAGCATCGAG
CAGATCTGCCAGATCGCCGAGCAGGAAGAGCCGAAGCTGATGGTAATCGATTCCATCCAGGTGATGCACATGGCGGATAT
TCAGTCATCTCCTGGCAGCGTGGCGCAGGTGCGCGAAACCGCCGCCTATCTGACGCGCTTCGCGAAAACGCGCGGCGTGG
CGATCGTGATGGTCGGCCACGTCACCAAAGATGGCTCGCTGGCGGGCCCAAAAGTGCTGGAGCACTGTATCGACTGTTCA
GTGCTGCTGGACGGCGACGCCGACTCGCGCTTCCGCACGCTGCGCAGCCATAAAAACCGCTTCGGCGCGGTTAACGAACT
GGGCGTGTTCGCCATGACCGAGCAGGGGATGCGCGAAGTCAGCAACCCGTCGGCGATCTTCCTGTCGCGCGGCGACGAGG
TAACCTCCGGCAGCTCCGTTATGGTGGTGTGGGAAGGCACGCGTCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGATCAC
TCAATGATGGGCAACCCGCGCCGCGTTGCGGTGGGGCTGGAGCAGAACCGTCTGGCGATTCTGCTGGCGGTGCTGCATCG
TCATGGCGGCCTGCAGATGGCCGATCAGGATGTCTTCGTCAACGTGGTGGGCGGCGTCAAGGTCACCGAGACCAGCGCCG
ATCTGGCGCTGCTGCTGGCGATGGTCTCAAGCCTGCGCGATCGTCCGCTGCCGCAGGACCTGGTGATCTTCGGCGAGGTA
GGGCTGGCGGGGGAGATCCGTCCGGTGCCGAGCGGGCAGGAGCGTATCTCCGAAGCGGCCAAGCACGGCTTCAAACGCGC
TATCGTGCCGGCCGGCAACGCGCCGAAGAAAGCGGTCGACGGCATGAAGGTTTACAGCGCGAAGAAACTGGCGGACGCGC
TGGCGATACTGGATGAGCTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

AAA domain (AAA_25)

(89-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J9E5E8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.276

100

0.487
  radA Streptococcus mitis NCTC 12261

43.736

98.913

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424

Multiple sequence alignment