Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AACH22_RS25375 Genome accession   NZ_OY970400
Coordinates   5233110..5234060 (-) Length   316 a.a.
NCBI ID   WP_338566727.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans isolate BFRIG     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5228110..5239060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH22_RS25360 (BFRIG_05136) - 5230262..5231209 (-) 948 WP_161922099.1 siderophore ABC transporter substrate-binding protein -
  AACH22_RS25365 (BFRIG_05137) - 5231418..5232176 (-) 759 WP_034310071.1 ABC transporter ATP-binding protein -
  AACH22_RS25370 (BFRIG_05138) - 5232170..5233117 (-) 948 WP_048688138.1 iron chelate uptake ABC transporter family permease subunit -
  AACH22_RS25375 (BFRIG_05139) ceuB 5233110..5234060 (-) 951 WP_338566727.1 ABC transporter permease Machinery gene
  AACH22_RS25380 (BFRIG_05140) - 5234326..5234667 (+) 342 WP_226990537.1 DUF1450 domain-containing protein -
  AACH22_RS25385 (BFRIG_05141) - 5234886..5236535 (+) 1650 WP_338566729.1 M14 family metallopeptidase -
  AACH22_RS25390 (BFRIG_05142) shc 5236704..5238599 (+) 1896 WP_048688130.1 squalene--hopene cyclase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34921.27 Da        Isoelectric Point: 9.6490

>NTDB_id=1162246 AACH22_RS25375 WP_338566727.1 5233110..5234060(-) (ceuB) [Peribacillus frigoritolerans isolate BFRIG]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLNLSDDKVQIMLQSRFPRMVTIVIAGIVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYLSIPLVILAYFFANKFTVAGMGEEFAINLGLNYKLIVNFGLIIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRILIYPFEIPIGLVIGVIGSAVFIYLILRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1162246 AACH22_RS25375 WP_338566727.1 5233110..5234060(-) (ceuB) [Peribacillus frigoritolerans isolate BFRIG]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTCTATCATTTACGTCATTATTCATTGGTGTAAAAGATATTACCCC
CCTGGATTTATTGAATCTCAGTGATGATAAAGTGCAAATCATGCTGCAAAGCCGTTTCCCCAGAATGGTGACCATAGTCA
TTGCCGGTATTGTGATGAGTATAAGCGGTCTGATCATGCAGCAATTGAGCCGCAATAAATTTGTATCCCCGACGACTGCC
GGTACCATGGACTCTGCAAGGCTGGGACTTCTTCTTGCCATTATCATTTTTCCATCGGCAGCACTTATTGAGAAAATGGC
ATTCGCTTTCATATTCGCTTTGGCAGGTACATTCTTGTTCATGAAAATTCTTGATCAAGTGAAATATAAGGATACGATCT
TCATTCCATTGGTTGGTTTGATGTTTGGTAATATCGTAGGATCGATCTCGACTTTCTTTGCCTATAAATATGATTTGATT
CAAAGCCTCAACACATGGATGAATGGTGATTTCTCGATGATCATGTCGGGAAGGTACGAGCTTATATATCTAAGTATCCC
GCTAGTCATTCTCGCATACTTCTTTGCCAATAAATTCACTGTGGCAGGGATGGGTGAGGAGTTTGCTATCAATCTAGGAC
TCAATTATAAGCTTATAGTCAATTTTGGATTGATCATCGTGGCATTATCCTCCACTGTCGTTTTGTTAACGGTGGGAACG
ATTCCTTTCATAGGATTGATCGTACCGAATATTGTATCCCTTTACCTTGGTGACAATTTGAAAAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCAGTCTTCCTATTGATCTGCGATATTCTGGGCAGGATCCTCATATATCCATTTGAAATCCCAATCG
GACTCGTGATTGGTGTGATAGGAAGCGCCGTATTTATCTATCTGATACTGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.316

100

0.503

Multiple sequence alignment